genome.fa.s368.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168193.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_43, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  234249

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 659 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139537--139612	25	3.0	25	75	9	66	50	1	1	47	1.18
140135--140183	13	3.6	14	77	17	50	48	0	2	48	1.12
140231--140274	17	2.6	17	82	3	54	54	0	0	45	0.99
140242--140332	34	2.5	37	82	8	107	50	0	0	49	1.00
140259--140346	17	5.4	17	66	26	57	50	0	0	50	1.00
140424--140490	25	2.7	25	79	4	73	47	0	2	49	1.16
140423--140525	25	4.2	24	71	14	68	47	1	1	48	1.24
140705--140834	8	15.9	8	68	15	52	52	0	0	46	1.06
140717--140834	25	4.7	25	72	17	77	53	0	0	46	1.00
141321--141363	23	2.0	23	86	9	63	46	2	6	44	1.43
142471--142528	10	5.0	12	79	14	52	55	0	0	44	0.99
142482--142567	37	2.3	37	80	8	93	54	2	1	41	1.20
142546--142587	14	2.9	14	76	16	50	54	4	0	40	1.21
142580--142633	29	1.9	27	82	14	65	42	1	0	55	1.10
142798--142870	29	2.4	30	80	8	78	53	0	2	43	1.15
142798--142839	14	2.9	15	75	7	50	57	0	0	42	0.99
143408--143461	12	4.1	12	76	21	54	55	0	1	42	1.10
143406--143455	15	3.4	15	81	10	59	56	0	0	44	0.99
143576--143700	22	5.7	22	69	19	66	46	1	0	51	1.16
143641--143684	7	6.1	7	82	15	54	47	0	0	52	1.00
143861--143912	18	2.9	19	75	16	56	36	11	7	44	1.70
144597--144639	10	4.3	11	83	16	58	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144595--144645	9	5.6	9	76	21	52	54	0	0	45	0.99
145293--145374	43	1.9	42	83	11	105	43	1	0	54	1.07
145337--145406	30	2.4	29	81	9	90	45	0	1	52	1.09
145431--145464	18	1.9	17	88	5	50	41	2	5	50	1.42
145435--145473	18	2.2	18	85	0	51	46	2	5	46	1.38
145492--145545	11	5.0	11	80	15	60	44	0	0	55	0.99
145926--145973	21	2.2	22	88	3	71	56	0	2	41	1.11
146262--146299	15	2.5	15	84	12	51	44	0	7	47	1.32
146468--146563	19	4.7	19	74	21	72	46	2	4	46	1.33
147672--147741	26	2.7	26	78	8	70	48	2	1	47	1.25
147993--148050	17	3.4	17	81	9	57	46	3	0	50	1.18
147993--148042	23	2.2	23	82	13	59	48	4	0	48	1.20
148030--148093	18	3.6	18	75	19	62	45	0	3	51	1.17
148763--148809	21	2.4	21	86	10	64	44	2	2	51	1.25
148906--148949	23	2.0	22	86	4	61	38	0	4	56	1.20
149042--149447	176	2.3	177	79	5	455	40	6	10	43	1.64
149450--149494	17	2.5	19	82	10	58	51	4	0	44	1.21
149549--149584	14	2.6	13	87	12	54	38	0	8	52	1.32
149577--149625	14	3.5	14	81	10	64	51	0	0	48	1.00
149580--149637	19	3.0	19	80	16	66	53	0	0	46	1.00
149580--149637	5	12.0	5	74	20	52	53	0	0	46	1.00
149623--149658	19	1.9	18	88	5	54	47	2	0	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149964--150001	13	2.8	13	81	18	51	52	0	2	44	1.14
149940--149984	22	2.0	22	83	8	56	46	2	2	48	1.26
150296--150331	18	2.0	18	89	10	56	63	0	5	30	1.17
150609--150714	6	18.0	6	71	14	53	47	3	0	48	1.26
150641--150699	32	1.9	31	83	10	77	47	5	1	45	1.34
150718--150773	25	2.3	24	82	11	62	51	1	1	44	1.22
151423--151480	20	2.8	20	84	2	71	48	1	0	50	1.11
151413--151504	15	6.2	15	75	17	68	50	2	0	47	1.13
151421--151489	20	3.5	20	75	16	65	47	1	0	50	1.09
151417--151578	57	2.9	57	78	13	135	49	1	0	48	1.13
152235--152343	10	12.3	9	71	23	56	49	1	0	47	1.18
152237--152323	19	4.6	19	70	24	51	49	1	1	48	1.16
152235--152337	18	6.1	16	73	22	70	50	0	0	47	1.14
152221--152313	39	2.4	38	81	13	100	49	1	2	47	1.20
152226--152337	32	3.4	32	73	19	79	50	0	1	47	1.18
152239--152337	50	2.0	50	81	18	118	50	1	1	47	1.14
152309--152333	13	1.9	13	100	0	50	48	0	0	52	1.00
152350--152410	18	3.6	16	75	14	52	47	3	0	49	1.18
152707--152742	18	2.0	18	88	0	54	50	0	0	50	1.00
152814--152895	26	3.2	26	77	16	82	48	2	2	46	1.28
152828--152907	24	3.2	24	76	15	81	46	1	3	48	1.28
153131--153182	23	2.3	23	86	6	70	50	0	1	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153399--153507	35	3.1	34	76	23	109	42	1	0	55	1.17
153751--153799	24	2.0	24	85	14	66	51	2	0	46	1.12
154028--154097	13	5.4	13	73	24	51	48	1	1	48	1.19
154050--154114	19	3.5	19	74	18	64	52	0	1	46	1.10
154029--154097	25	2.7	26	82	17	74	49	1	1	47	1.19
154050--154136	36	2.3	37	78	11	97	50	1	1	47	1.16
154105--154167	21	3.0	21	70	23	51	46	3	1	49	1.27
154197--154268	24	3.1	22	82	13	83	55	1	0	43	1.08
154343--154554	14	16.2	13	67	21	88	46	0	0	51	1.13
154344--154451	24	4.5	23	73	20	80	44	0	0	53	1.13
154352--154456	25	4.2	25	72	16	76	45	0	0	53	1.06
154381--154463	40	2.1	40	84	4	105	46	0	1	51	1.08
154521--154564	15	2.7	16	82	13	54	50	0	0	50	1.00
154478--154565	34	2.9	32	75	23	91	48	0	0	51	1.00
154851--154901	18	2.8	19	77	11	54	54	0	0	45	0.99
156302--156376	17	4.7	17	76	12	70	45	0	0	54	0.99
156334--156371	14	2.8	13	88	11	58	36	0	0	63	0.95
156441--156485	22	2.0	23	83	12	58	42	0	4	53	1.21
156480--156534	25	2.2	26	86	3	76	52	1	0	45	1.11
156493--156552	18	3.2	18	73	20	52	48	3	0	48	1.18
156745--156782	20	1.9	20	94	0	67	50	0	0	50	1.00
156941--157032	29	3.1	30	79	14	84	52	1	1	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156958--157057	14	6.8	15	71	20	61	49	3	2	46	1.28
156941--157006	11	6.4	10	75	13	53	53	1	0	45	1.09
156953--157022	15	5.1	14	74	14	58	51	1	0	47	1.09
157369--157429	31	2.0	31	87	6	88	42	1	1	54	1.20
157392--157456	23	2.9	24	76	21	61	49	0	1	49	1.10
157579--157611	17	2.0	17	88	5	50	51	3	0	45	1.16
157741--157772	12	2.8	12	95	4	57	50	0	0	50	1.00
157929--157960	10	3.1	11	82	17	50	46	0	0	53	1.00
158418--158458	18	2.2	19	86	4	57	48	0	4	46	1.23
158605--158645	16	2.6	17	88	11	61	53	0	0	46	1.00
158631--158675	19	2.4	19	88	7	65	53	0	2	44	1.13
159179--159257	38	2.0	40	83	14	101	51	1	0	46	1.08
159388--159456	29	2.4	29	81	11	79	39	1	4	55	1.29
159692--159752	12	4.8	12	78	13	52	44	1	0	54	1.10
159706--159752	13	3.5	13	77	11	51	46	0	0	53	1.00
160284--160325	21	2.0	21	85	4	57	38	4	2	54	1.34
160525--160590	21	3.4	18	72	24	55	43	1	3	51	1.26
160599--160646	13	3.8	13	73	15	55	45	2	6	45	1.40
160605--160658	25	2.2	24	87	9	74	44	1	7	46	1.42
160797--160844	21	2.3	21	75	7	53	56	0	4	39	1.19
161806--161846	21	2.0	21	85	9	57	41	4	0	53	1.22
162474--162512	15	2.5	16	80	19	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162613--162660	18	2.8	17	75	9	53	41	4	0	54	1.20
163005--165890	180	16.2	179	75	9	2142	41	9	8	40	1.68
163054--165890	539	5.3	532	76	10	1953	41	9	8	40	1.68
166045--166106	15	4.3	15	75	15	51	46	1	1	50	1.20
166085--166128	19	2.4	18	81	7	52	52	2	0	45	1.13
166190--166248	31	1.9	31	83	13	77	50	1	0	47	1.11
168591--168688	35	2.8	35	79	13	89	51	0	5	43	1.24
169312--169373	31	2.0	31	81	12	74	43	6	0	50	1.28
169867--169965	34	3.3	29	77	21	98	45	1	3	50	1.23
169926--169959	10	3.3	10	88	8	50	47	0	0	52	1.00

Tables:   1   2   3   4   5   6