genome.fa.s368.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168193.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_43, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  234249

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 659 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170209--170263	20	2.8	20	76	15	62	45	1	1	50	1.22
170209--170269	18	3.3	18	74	17	61	45	1	1	50	1.21
170223--170284	27	2.3	27	83	13	74	46	1	1	50	1.20
171411--171865	63	7.2	63	79	5	411	29	26	9	34	1.88
171416--171838	127	3.4	124	79	7	426	28	27	9	34	1.88
172595--172623	13	2.1	14	93	6	51	0	17	0	82	0.66
174123--174173	19	2.6	19	81	9	59	37	0	3	58	1.16
174332--174375	23	1.9	22	90	9	70	54	0	0	45	0.99
174330--174359	14	2.1	15	93	6	53	56	0	0	43	0.99
174360--174395	16	2.2	16	95	0	63	55	0	0	44	0.99
174333--174377	11	3.8	12	82	11	58	55	0	0	44	0.99
174335--174484	43	3.5	43	73	14	98	48	2	0	48	1.17
174423--174476	14	3.9	14	72	27	53	42	1	0	55	1.10
174469--174509	12	3.0	14	79	17	50	51	0	0	48	1.00
174830--174872	22	2.0	22	86	9	61	53	6	0	39	1.28
175113--175152	16	2.4	16	84	16	55	45	0	5	50	1.23
175969--176009	19	2.2	19	86	0	55	48	4	0	46	1.23
176468--177047	182	3.2	179	77	8	559	43	8	7	40	1.64
177603--178178	181	3.2	178	75	9	526	39	7	9	43	1.66
178226--178254	9	3.3	9	95	4	51	58	0	0	41	0.98
178438--178467	15	2.0	15	93	0	51	46	3	0	50	1.18
178820--178876	19	2.9	21	82	10	59	36	0	5	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178844--178880	19	2.0	19	94	5	67	37	0	8	54	1.30
179080--179104	4	6.2	4	100	0	50	48	0	0	52	1.00
179172--179217	14	3.4	14	77	22	53	45	0	0	54	0.99
179169--179221	21	2.7	19	81	16	63	43	0	0	56	0.99
179179--179213	7	5.0	7	86	13	54	45	0	0	54	0.99
179351--179375	9	2.8	9	100	0	50	48	0	8	44	1.32
179767--179887	55	2.2	55	85	5	156	23	14	8	52	1.69
179884--179915	5	6.8	5	92	7	50	18	0	0	81	0.70
181119--181207	43	2.1	42	86	10	121	40	24	15	19	1.90
181472--181776	21	13.6	21	78	10	229	35	16	10	38	1.82
181498--181818	25	14.1	25	78	12	236	34	14	11	39	1.81
181498--181736	67	3.5	68	81	6	272	35	15	10	39	1.81
181658--181810	46	3.3	46	94	2	256	33	13	13	39	1.83
181475--181776	113	2.7	112	83	8	366	35	15	10	38	1.82
182407--182502	50	1.9	50	85	4	131	27	14	9	48	1.74
182535--182888	185	1.9	184	80	10	418	33	11	6	48	1.66
183197--183241	15	2.9	16	80	6	56	55	0	0	44	0.99
183258--183302	9	4.9	9	82	12	56	48	0	0	51	1.00
183225--183299	19	3.6	19	77	16	69	50	2	2	44	1.30
183430--183478	20	2.4	20	83	10	55	61	2	2	34	1.19
183602--183644	15	2.9	15	80	16	54	44	0	0	55	0.99
183602--183660	27	2.1	29	81	6	68	47	0	1	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183718--183758	19	2.3	17	83	8	55	48	4	0	46	1.23
183757--183814	10	5.0	12	75	19	52	48	1	1	48	1.22
184029--184091	24	2.6	23	78	16	65	52	1	1	44	1.20
184915--184968	19	2.7	20	77	16	58	51	1	0	46	1.11
184933--184971	19	2.1	18	90	4	60	56	0	0	43	0.99
185281--185325	23	2.0	23	86	8	65	46	2	0	51	1.13
185281--185356	40	2.0	40	84	10	104	51	1	1	46	1.17
185312--185360	22	2.2	23	85	10	66	57	0	2	40	1.10
186826--187339	181	2.8	180	76	4	383	40	8	8	42	1.66
187967--188437	181	2.6	181	79	5	506	40	9	11	38	1.73
188752--188786	13	2.6	14	86	9	54	57	0	2	40	1.14
188761--188805	18	2.5	17	82	10	54	51	0	0	48	1.00
188773--188827	15	3.8	15	81	13	55	43	0	1	54	1.10
188774--188842	18	3.7	19	84	11	90	43	0	2	53	1.15
188778--188858	10	8.1	9	71	17	54	44	0	2	53	1.14
189122--189156	18	1.9	18	88	0	52	51	2	2	42	1.31
189365--189421	9	6.9	8	75	13	53	49	1	0	49	1.11
189363--189438	25	3.0	24	77	15	73	47	1	1	50	1.18
189372--189419	16	2.9	16	81	12	62	52	2	0	45	1.12
190019--190075	19	3.2	18	73	21	57	45	0	0	54	0.99
190019--190075	10	6.3	9	74	13	55	45	0	0	54	0.99
190557--190617	18	3.4	18	79	4	61	54	0	1	44	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191233--191278	23	2.0	22	84	12	58	60	2	2	34	1.21
191471--191537	19	3.5	19	76	11	66	49	2	0	47	1.16
191537--191594	10	5.0	12	75	19	52	48	1	1	48	1.22
191627--191665	13	2.9	14	80	7	53	61	0	2	35	1.10
191801--191847	24	2.0	24	83	8	60	51	2	2	44	1.25
193029--193077	25	2.0	23	88	7	71	51	0	0	48	1.00
193027--193070	11	3.7	11	77	16	52	52	0	0	47	1.00
193905--194278	179	2.1	181	81	3	432	40	9	8	41	1.68
194447--194825	181	2.1	181	82	2	467	39	8	10	41	1.70
194852--195426	181	3.2	181	77	8	478	41	8	10	39	1.70
195971--196009	20	2.0	19	85	5	51	41	2	0	56	1.13
196148--196182	18	1.9	18	88	0	52	51	2	2	42	1.31
196263--196323	29	2.0	30	87	6	88	47	3	0	49	1.18
196307--196355	13	3.6	14	77	17	50	48	0	2	48	1.12
196482--196540	21	2.7	21	84	5	73	45	5	3	45	1.42
196746--196784	13	3.1	13	92	3	62	51	0	0	48	1.00
197469--197519	25	2.0	26	84	3	68	49	0	1	49	1.12
197741--197770	15	2.1	15	93	6	53	60	0	0	40	0.97
198200--198287	12	7.7	12	72	23	50	47	0	3	48	1.18
198225--198255	14	2.2	14	94	0	53	48	0	6	45	1.28
198378--198439	13	4.5	13	77	16	54	48	0	0	51	1.00
198380--198422	15	2.8	16	86	6	54	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198391--198459	22	3.1	22	77	8	77	47	0	0	52	1.00
198333--198459	49	2.6	49	81	13	140	44	3	0	51	1.17
198380--198457	26	2.9	27	73	17	74	47	0	0	52	1.00
198404--198494	36	2.5	36	81	12	98	48	0	2	49	1.13
198400--198488	35	2.6	34	79	10	94	48	0	2	49	1.13
198891--198924	16	2.1	16	88	0	50	47	0	2	50	1.16
198973--199013	14	3.1	14	83	13	52	48	0	0	51	1.00
199170--200415	180	7.0	178	75	7	857	43	10	7	39	1.67
199278--201981	356	7.6	354	74	8	1863	41	10	8	40	1.68
200078--200118	19	2.2	18	87	12	57	56	2	2	39	1.26
200078--200126	18	2.7	20	82	14	54	53	4	2	40	1.32
200432--201981	181	8.7	179	77	6	1263	40	10	8	41	1.69
200527--201898	713	1.9	718	80	6	1609	40	10	7	41	1.68
201638--202306	336	2.0	332	80	6	740	41	8	8	41	1.65
203040--203127	43	2.0	43	97	0	167	50	10	11	28	1.71
203323--203371	19	2.5	19	86	3	71	34	16	6	42	1.73
204119--204160	17	2.4	18	84	8	59	61	2	0	35	1.09
206862--207180	21	14.5	21	79	11	254	36	16	8	38	1.79
206862--207180	43	7.3	42	82	8	293	36	16	8	38	1.79
206862--207212	65	5.3	65	81	9	306	36	15	9	38	1.79
206994--207033	14	3.1	14	72	20	50	32	10	7	50	1.64
206888--207121	68	3.5	68	85	2	298	36	15	8	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207800--207894	49	1.9	49	85	4	129	26	14	9	49	1.74
208586--208629	15	2.8	16	79	6	54	54	0	0	45	0.99
208647--208679	9	3.5	10	92	8	52	42	0	0	57	0.98
208797--208845	21	2.3	21	79	6	55	55	2	4	38	1.31
208805--208851	21	2.2	20	79	17	51	59	2	2	36	1.21
208864--208902	19	2.1	18	90	4	60	35	5	5	53	1.45
208907--208950	21	2.2	20	84	12	54	45	2	2	50	1.27
208989--209031	15	2.9	15	80	16	54	44	0	0	55	0.99
208989--209047	27	2.1	29	81	6	68	47	0	1	50	1.11
209105--209171	14	4.1	17	75	16	61	47	4	0	47	1.22

Tables:   1   2   3   4   5   6