genome.fa.s368.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168193.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_43, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  234249

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 659 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41142--41193	13	4.2	12	77	18	54	53	3	1	40	1.30
41188--41272	36	2.4	35	77	15	84	44	0	4	50	1.22
42506--42539	18	2.0	17	88	11	52	47	2	5	44	1.42
42283--42721	177	2.5	180	76	5	433	41	7	11	40	1.68
43025--43059	13	2.6	13	90	4	52	57	2	0	40	1.14
43101--43149	22	2.3	22	79	10	57	44	0	6	48	1.27
43699--43743	22	2.0	24	86	8	67	46	2	2	48	1.26
44211--45307	177	6.1	180	79	6	971	42	8	9	40	1.67
44296--45263	358	2.7	355	79	6	961	42	8	8	40	1.67
46208--46237	9	3.2	9	95	4	51	53	3	0	43	1.17
46621--46665	16	2.8	16	83	16	58	53	2	0	44	1.13
46650--46703	20	2.6	20	83	16	58	42	1	5	50	1.36
47249--47292	18	2.5	17	82	14	54	43	0	0	56	0.99
47249--47302	19	3.1	17	75	12	56	44	0	0	55	0.99
47350--47393	23	2.0	22	86	4	61	34	2	9	54	1.44
48305--48361	10	5.7	10	75	22	57	47	0	0	52	1.00
48289--48374	40	2.2	39	80	14	95	48	0	0	51	1.00
48317--48556	29	8.2	29	65	24	98	46	1	1	50	1.19
48301--48610	11	27.1	11	67	23	62	46	1	1	50	1.19
48461--48506	25	1.9	24	86	8	67	47	2	2	47	1.26
48491--48618	28	4.6	27	68	25	72	41	0	2	56	1.12
48486--48622	34	3.9	34	75	11	102	43	0	2	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48514--48569	21	2.7	21	81	10	71	41	0	1	57	1.09
48616--48727	11	9.8	12	67	26	57	53	1	0	43	1.17
48634--48665	16	1.9	17	93	6	57	46	3	0	50	1.17
48545--48724	38	4.5	39	68	23	106	48	1	1	48	1.18
49824--49876	6	9.0	6	78	17	58	49	1	0	49	1.12
49829--49876	17	2.8	17	81	15	55	50	2	0	47	1.12
49992--50095	22	4.7	22	71	13	72	53	1	0	44	1.11
49958--50068	16	7.0	16	71	17	63	49	1	0	47	1.18
49995--50079	19	4.7	20	73	19	71	54	1	0	44	1.07
50026--50079	14	3.7	15	74	18	51	57	0	0	42	0.98
49958--50095	44	3.1	44	75	17	110	50	2	0	46	1.18
50119--50157	19	2.1	19	85	0	51	48	0	2	48	1.15
50191--50242	18	2.9	18	81	10	54	55	0	3	40	1.18
50553--50599	13	3.7	13	83	11	62	55	0	0	44	0.99
50816--50867	21	2.6	21	79	8	56	48	1	0	50	1.12
50823--50867	19	2.4	19	88	3	65	46	0	0	53	1.00
50836--50901	16	4.3	16	71	21	61	46	0	1	51	1.10
51782--51831	11	4.9	10	75	20	50	48	0	2	50	1.12
52950--53014	32	2.1	31	85	8	87	50	0	4	44	1.22
54556--54595	20	2.0	20	85	9	55	52	2	2	42	1.28
54565--54623	10	5.7	10	73	18	50	54	1	1	42	1.20
54878--54940	18	3.4	19	70	18	60	41	4	0	53	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55210--55295	28	2.9	30	74	19	74	52	2	3	41	1.31
55395--55431	19	1.9	19	88	0	56	51	5	2	40	1.39
55788--55896	9	11.3	9	69	18	51	42	2	3	51	1.34
55849--55896	21	2.3	20	82	10	62	45	2	0	52	1.12
56189--56267	34	2.4	34	81	12	92	49	3	0	46	1.19
56239--56302	16	4.0	16	70	8	58	46	1	1	50	1.20
57973--58026	28	1.9	28	85	7	74	42	1	0	55	1.10
57970--58027	18	3.2	18	80	9	57	41	1	0	56	1.09
58280--58358	16	4.9	16	70	19	58	40	0	2	56	1.12
58325--58349	13	1.9	13	100	0	50	48	0	0	52	1.00
58854--58886	17	2.0	17	88	5	50	54	0	9	36	1.32
59587--59632	17	2.6	19	73	16	53	39	0	2	58	1.10
60612--60650	17	2.3	17	86	8	53	51	5	0	43	1.24
60603--60651	15	3.2	16	78	16	59	44	6	0	48	1.27
61166--61211	18	2.3	21	89	10	71	54	0	0	45	0.99
61167--61217	21	2.4	21	83	3	66	54	0	0	45	0.99
61166--61213	11	4.8	11	78	21	61	54	0	0	45	0.99
63266--63306	21	2.0	21	85	9	57	63	0	4	31	1.15
63399--63445	17	2.7	17	78	15	60	46	2	0	51	1.13
63465--63523	27	2.1	28	87	3	84	52	1	3	42	1.28
63946--64008	17	3.9	17	76	21	64	44	3	0	52	1.17
63958--63984	14	1.9	14	100	0	54	37	7	0	55	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64665--64704	21	1.9	21	85	10	55	50	5	2	42	1.37
64821--64868	23	2.1	22	88	3	69	41	0	2	56	1.11
65801--65903	30	3.5	30	67	17	83	50	0	1	46	1.19
65868--65930	14	4.3	15	78	9	58	50	0	1	47	1.10
66454--66497	23	1.9	23	81	9	54	47	0	2	50	1.13
66770--66828	23	2.6	22	78	21	68	49	3	0	47	1.18
66920--66978	21	2.7	22	80	15	61	47	0	0	52	1.00
67268--67316	23	2.2	22	82	10	55	34	4	6	55	1.44
69926--69983	16	4.2	14	71	24	52	55	0	0	44	0.99
69948--69985	16	2.5	15	95	4	67	52	0	0	47	1.00
69948--69992	16	2.9	15	87	9	63	53	0	0	46	1.00
70162--70218	27	2.2	25	84	12	71	52	3	0	43	1.18
70238--70272	12	3.0	11	88	12	52	42	0	2	54	1.15
70427--70468	22	2.0	21	86	13	59	52	7	0	40	1.29
70659--70701	22	2.0	22	81	9	52	44	2	2	51	1.27
71081--71115	17	2.0	18	94	5	63	51	0	0	48	1.00
71422--71484	33	2.0	33	81	9	78	52	1	0	46	1.10
71445--71484	19	2.1	19	86	9	55	47	0	0	52	1.00
71573--71613	19	2.2	19	86	0	55	48	4	0	46	1.23
71714--71758	17	2.4	19	76	23	51	42	4	2	51	1.34
72274--72584	166	1.9	166	83	6	407	40	10	7	40	1.69
72951--72991	19	2.2	19	86	0	55	48	4	0	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73334--73372	19	2.0	20	85	5	53	48	2	2	46	1.29
75719--75766	17	2.8	17	75	9	53	54	4	0	41	1.20
76022--76065	13	3.2	13	83	6	52	47	0	6	45	1.29
76099--76157	31	1.9	31	86	13	86	47	0	1	50	1.11
77031--77080	19	2.7	18	81	6	55	50	0	0	50	1.00
77039--77108	26	2.9	25	86	14	94	45	1	0	52	1.09
77497--77552	24	2.5	22	82	11	60	55	1	0	42	1.10
77724--77763	15	2.9	14	88	7	55	55	2	2	40	1.27
77939--77973	13	2.6	14	86	9	54	54	0	0	45	0.99
78395--78442	25	1.9	25	86	0	69	50	0	2	47	1.12
78535--78596	26	2.3	29	81	13	80	48	3	1	46	1.28
78544--78602	26	2.1	29	81	9	70	47	3	3	45	1.36
78742--78829	18	4.9	18	72	17	67	51	2	0	46	1.13
79193--79229	17	2.2	17	90	0	56	51	0	0	48	1.00
79209--79268	22	2.7	22	89	7	86	41	0	0	58	0.98
79218--79265	13	4.0	13	71	20	50	35	0	0	64	0.94
79736--79805	11	6.5	11	75	11	56	47	0	1	51	1.09
79751--79830	16	4.8	16	73	16	56	50	1	1	47	1.17
80229--80274	12	3.8	12	80	13	58	43	0	0	56	0.99
80533--80565	15	2.2	15	94	0	57	54	0	0	45	0.99
80589--80644	19	3.1	19	73	14	55	51	0	0	48	1.00
80607--80645	15	2.5	15	83	4	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80621--80650	12	2.4	13	94	5	53	50	0	0	50	1.00
80818--80873	17	3.4	16	76	16	53	48	0	0	51	1.00
80804--80873	31	2.3	32	80	9	83	45	0	1	52	1.09
80819--80866	23	2.1	23	88	7	71	47	0	0	52	1.00
80811--80878	25	2.8	23	82	17	77	45	0	1	52	1.09
80879--80928	24	2.1	24	88	3	75	32	0	6	62	1.20
82269--82324	19	3.1	18	79	20	64	51	1	0	46	1.11
82273--82320	19	2.5	20	83	16	66	54	2	0	43	1.12
82315--82356	19	2.2	19	83	8	50	52	4	0	42	1.22
83170--83219	24	2.0	25	84	3	66	48	0	2	50	1.12

Tables:   1   2   3   4   5   6