genome.fa.s434.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168259.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_49, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  171922

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 574 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34662--34840	45	3.8	46	75	18	179	40	3	1	54	1.24
34701--34860	52	3.2	52	73	19	185	41	2	1	54	1.22
34661--34860	97	2.1	98	98	0	384	41	3	1	54	1.22
34709--34857	45	3.2	45	75	16	158	42	2	1	53	1.23
35449--35494	10	4.6	10	82	12	51	60	0	0	39	0.97
35449--35509	31	2.0	31	87	6	88	54	1	1	42	1.20
35990--36042	17	2.8	20	77	16	67	50	0	1	47	1.12
35989--36058	20	3.7	20	75	9	65	50	0	2	47	1.16
36162--36216	21	2.8	19	77	20	60	47	1	3	47	1.30
36375--36436	21	2.6	24	75	21	67	56	0	1	41	1.09
36656--36721	23	2.9	23	72	17	64	50	1	1	46	1.20
36666--36700	17	2.2	17	90	10	56	51	2	0	45	1.16
36924--37002	41	1.9	41	82	10	99	51	0	2	45	1.14
36932--37027	22	4.6	20	77	18	88	50	0	3	46	1.17
37479--37563	30	2.6	32	72	22	79	50	2	0	47	1.14
37683--37763	19	4.2	19	70	10	58	46	3	0	49	1.19
37747--37788	23	2.0	21	86	13	59	45	2	0	52	1.13
37752--37807	22	2.4	23	82	14	62	44	3	1	50	1.29
37778--37827	19	2.6	19	78	9	57	42	2	4	52	1.31
37967--38018	27	1.9	27	84	7	70	44	1	3	50	1.31
37979--38049	15	4.7	15	73	23	53	40	1	7	50	1.38
37974--38015	20	2.2	20	95	4	77	45	0	4	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38140--38284	6	23.3	6	68	25	56	48	1	0	48	1.14
38137--38286	11	12.8	12	67	25	56	48	1	0	49	1.14
38097--38195	43	2.2	47	82	12	120	45	5	2	47	1.36
38165--38253	25	3.5	26	76	16	73	48	2	0	49	1.13
38187--38253	27	2.6	27	78	19	72	49	1	0	49	1.10
38235--38284	20	2.6	19	87	9	75	54	0	0	46	1.00
38462--38510	23	2.1	24	88	3	73	48	0	2	48	1.12
38912--38965	24	2.2	24	80	12	56	59	1	0	38	1.08
40788--40835	16	2.9	16	81	12	62	52	2	0	45	1.12
40778--40847	25	2.7	26	84	6	90	47	1	0	51	1.09
41152--41189	19	2.1	18	90	5	58	44	0	0	55	0.99
41678--41704	14	1.9	14	100	0	54	29	0	3	66	1.09
41714--41742	14	2.1	14	93	6	51	58	0	0	41	0.98
41871--41926	18	3.2	18	78	19	64	51	0	1	46	1.11
42068--42125	20	2.9	20	85	12	75	39	5	0	55	1.22
42143--42183	21	2.0	21	90	0	64	63	0	2	34	1.08
43913--43945	13	2.4	14	85	10	50	48	3	3	45	1.33
44398--44688	147	2.0	146	81	3	343	38	8	9	43	1.69
46327--46396	24	3.0	23	78	11	72	50	4	1	44	1.30
47718--47766	13	3.8	13	73	10	55	48	2	4	44	1.33
48110--48158	22	2.2	22	82	7	64	46	0	0	53	1.00
48230--48271	16	2.5	17	81	18	52	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48402--48444	17	2.4	18	84	7	52	58	0	4	37	1.19
48740--48789	25	2.0	25	84	7	66	60	0	0	40	0.97
48740--48792	13	4.1	13	81	13	56	60	0	0	39	0.97
49205--49261	27	2.1	27	83	6	71	47	0	3	49	1.18
49213--49264	16	3.2	17	81	10	65	48	0	3	48	1.20
49999--50033	10	3.2	11	88	12	54	54	0	2	42	1.15
50046--50086	18	2.2	19	86	4	57	48	0	4	46	1.23
50252--50320	22	3.3	20	74	20	61	55	1	1	42	1.18
50639--50672	12	2.8	12	86	4	50	55	0	0	44	0.99
50997--51034	20	1.9	20	84	10	51	42	2	5	50	1.39
51072--51119	17	2.9	17	84	3	62	58	2	0	39	1.10
51713--51752	21	1.9	21	90	10	64	45	2	5	47	1.38
51752--52830	181	6.0	179	78	7	976	40	10	8	40	1.70
54558--54609	7	7.0	8	73	22	51	51	0	0	48	1.00
54571--54600	13	2.3	13	100	0	60	46	0	0	53	1.00
54557--54620	21	3.0	20	78	21	67	51	1	0	46	1.10
54556--54609	15	3.7	14	83	14	65	51	0	0	48	1.00
54737--54821	45	1.9	44	81	11	102	41	4	4	49	1.44
55002--55057	20	3.0	19	75	10	53	44	0	1	53	1.11
56104--56163	15	3.9	16	80	6	70	50	0	1	48	1.11
56314--56376	14	4.3	15	74	21	55	46	0	1	52	1.10
57350--57987	180	3.6	176	79	7	637	38	6	11	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58174--58225	14	3.4	17	82	17	62	44	0	0	55	0.99
58175--58236	28	2.1	31	82	8	76	45	0	0	54	0.99
58783--58813	6	5.2	6	96	0	53	54	16	0	29	1.42
59135--59173	6	6.7	6	82	5	53	46	2	2	48	1.29
59134--59173	17	2.3	17	86	4	53	45	2	2	50	1.28
59539--60056	177	2.9	174	79	8	531	39	7	10	42	1.68
60357--60676	160	2.0	160	100	0	640	39	3	11	45	1.58
60699--60765	27	2.4	28	75	9	75	58	4	0	37	1.19
61611--61659	18	2.8	18	72	25	50	57	2	2	38	1.22
61594--61661	27	2.4	28	73	11	68	58	2	1	36	1.22
61638--61719	27	3.2	25	75	19	71	51	1	2	45	1.22
61652--61701	23	2.1	25	85	7	68	52	0	2	46	1.12
61955--62016	26	2.4	25	81	13	63	46	1	1	50	1.20
62346--63216	180	4.8	180	74	8	673	41	9	9	39	1.70
63152--63588	243	1.8	242	81	3	547	39	10	8	41	1.70
63567--63615	20	2.4	21	83	12	59	32	4	6	57	1.42
63519--63948	181	2.4	180	79	3	474	41	8	6	43	1.62
63620--64238	323	1.9	323	80	5	734	42	9	8	40	1.66
64531--64560	15	1.9	16	93	6	53	20	0	0	80	0.72
64569--64635	26	2.5	27	85	4	91	31	2	2	62	1.25
64925--64957	11	3.3	10	88	12	50	27	0	18	54	1.44
64925--64968	21	2.2	20	83	4	52	25	2	20	52	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65095--65133	20	2.0	20	90	10	62	66	0	33	0	0.92
68864--68897	15	2.3	15	89	0	50	29	23	0	47	1.52
76116--76178	16	3.8	16	78	17	67	77	0	14	7	0.97
77168--77597	43	9.9	43	81	5	490	21	13	20	44	1.85
77162--77596	175	2.5	174	87	3	615	22	13	20	44	1.85
77162--77597	131	3.3	131	84	7	582	22	13	20	44	1.85
77796--77909	27	4.1	27	76	8	106	29	4	1	64	1.23
78194--78234	21	2.0	21	85	0	55	29	2	19	48	1.61
78565--78618	3	18.0	3	92	7	92	33	0	0	66	0.92
78636--78679	5	8.6	5	95	5	79	20	0	0	79	0.73
78706--79048	58	6.0	58	83	7	416	44	6	12	36	1.68
78683--79048	115	3.2	115	85	5	458	44	6	11	37	1.67
79854--80089	120	2.0	119	85	4	323	34	13	8	44	1.73
79980--80768	179	4.4	176	76	8	666	41	8	8	41	1.67
79980--80753	359	2.2	359	82	5	915	41	9	8	41	1.66
80776--81145	177	2.1	178	83	6	464	41	9	8	40	1.68
80776--81165	176	2.2	178	82	5	432	41	10	7	40	1.68
81220--81253	14	2.4	15	90	9	54	41	8	0	50	1.34
81355--81418	28	2.3	29	81	5	69	45	1	1	51	1.20
82175--82208	18	1.9	17	88	5	50	44	0	0	55	0.99
84234--84362	41	3.2	41	85	2	188	19	11	21	47	1.81
84758--84806	25	2.0	25	84	8	64	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84821--84901	20	4.0	20	68	16	58	49	1	1	48	1.17
85023--85100	27	2.9	27	72	14	70	51	2	1	44	1.23
84976--85616	325	2.0	325	100	0	1282	48	5	3	42	1.42
85348--85425	27	2.9	27	72	14	70	51	2	1	44	1.23
85951--86007	30	1.9	29	82	10	71	49	1	1	47	1.22
86275--86347	10	7.0	11	70	20	50	47	1	0	50	1.09
86286--86339	21	2.5	23	79	14	69	46	1	0	51	1.11
86239--86328	32	2.7	31	80	11	90	46	0	4	48	1.22
86794--86838	24	2.0	22	83	16	56	57	2	2	37	1.23
87185--87238	15	3.7	15	78	11	60	44	0	1	53	1.11

Tables:   1   2   3   4   5