genome.fa.s434.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168259.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_49, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  171922

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 574 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112843--112903	21	2.7	23	82	12	65	52	0	1	45	1.10
112964--113442	181	2.7	180	78	3	514	41	11	8	39	1.71
113489--113554	24	2.9	23	76	12	64	50	4	1	43	1.32
113506--113556	24	2.1	25	85	3	68	49	1	1	47	1.24
113543--113573	12	2.5	12	94	5	53	45	0	0	54	0.99
114743--114797	24	2.3	25	75	12	62	56	3	1	38	1.28
114518--115267	182	4.2	178	78	7	700	40	10	7	41	1.68
115175--115207	18	1.9	17	88	11	50	33	6	12	48	1.65
115346--115379	14	2.5	14	90	4	52	41	5	0	52	1.25
115411--115533	16	7.6	17	68	19	57	44	1	3	50	1.27
115507--115612	15	7.1	15	70	17	78	50	0	0	47	1.13
115745--115788	20	2.3	19	80	4	52	54	2	0	43	1.12
115810--115874	25	2.4	27	78	14	73	46	0	0	53	1.00
115818--115872	19	2.9	20	82	15	64	43	0	0	56	0.99
115842--115888	19	2.5	19	79	10	51	46	0	4	48	1.21
115923--115970	21	2.3	21	77	0	51	56	4	2	37	1.30
116111--116632	182	2.9	180	78	10	465	40	7	9	42	1.66
117162--117201	19	2.1	19	86	9	55	52	0	0	47	1.00
117188--117252	10	6.0	11	75	22	66	43	0	1	55	1.09
117186--117252	3	21.3	3	75	14	55	43	0	1	55	1.09
117186--117249	19	3.2	19	77	20	60	43	0	1	54	1.09
117186--117250	16	3.8	18	78	17	77	43	0	1	55	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117520--117556	19	1.9	19	88	0	56	45	0	5	48	1.25
117769--117809	16	2.6	15	88	7	55	46	0	0	53	1.00
117850--117886	16	2.2	18	85	9	51	54	2	2	40	1.29
117912--117947	17	2.3	15	90	9	54	44	0	0	55	0.99
117995--118045	22	2.2	24	82	6	70	56	0	0	43	0.99
117995--118037	17	2.5	17	81	7	52	55	0	0	44	0.99
118039--118098	17	3.5	17	70	17	52	46	0	1	51	1.10
118241--118304	20	3.3	19	76	20	60	50	4	1	43	1.32
118406--118439	13	2.6	13	90	0	50	52	2	0	44	1.16
118560--118592	9	3.8	9	84	8	50	42	3	0	54	1.15
118691--118731	15	2.9	14	89	7	57	53	2	0	43	1.13
118818--118951	41	3.2	40	71	23	105	50	2	0	46	1.22
118834--118930	46	2.1	45	83	12	119	51	2	0	46	1.12
118834--118898	24	3.0	21	70	16	60	49	1	0	49	1.10
119050--119096	24	2.0	24	83	8	60	53	6	0	40	1.27
119767--119808	16	2.5	17	88	7	59	61	2	0	35	1.09
119978--120020	16	2.6	17	82	14	54	51	0	0	48	1.00
120212--120371	54	3.0	54	73	15	145	46	3	1	48	1.31
120283--120372	28	3.3	27	71	10	76	43	2	2	52	1.26
120405--120473	21	3.5	20	71	13	54	49	1	0	49	1.09
121275--121483	15	14.1	15	67	18	75	48	3	1	46	1.27
121261--121334	38	1.9	38	81	10	89	50	0	1	48	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121337--121410	27	3.0	25	78	9	73	45	1	0	52	1.09
121256--121372	32	3.6	32	73	13	96	47	1	0	49	1.17
121348--121410	25	2.5	25	87	7	83	44	1	0	53	1.10
121361--121420	27	2.2	27	82	11	77	46	1	1	50	1.21
121522--121614	45	2.1	44	81	15	104	46	2	3	48	1.30
121579--121620	15	2.7	15	88	3	57	47	0	2	50	1.14
121948--121993	16	2.9	16	78	18	51	39	2	2	56	1.24
121986--122032	23	2.3	19	85	14	58	44	0	2	53	1.12
122044--122108	25	2.4	26	80	15	69	53	1	1	43	1.19
122036--122106	23	2.9	25	81	10	76	53	1	2	42	1.24
122168--122200	10	3.2	11	83	16	52	54	0	0	45	0.99
122356--122396	11	3.6	11	83	6	55	53	0	2	43	1.13
122609--122670	30	2.1	30	88	11	92	48	0	3	48	1.17
123272--123339	6	11.0	6	79	16	68	50	0	0	50	1.00
123269--123333	13	5.2	13	82	14	75	52	0	0	47	1.00
123285--123339	19	3.0	19	84	5	78	50	0	0	49	1.00
123401--123437	15	2.5	15	90	0	65	51	0	0	48	1.00
123510--123569	22	2.8	21	73	14	59	46	3	5	45	1.41
124379--124934	180	3.1	176	76	5	542	38	7	10	43	1.67
125072--125127	19	2.8	20	82	15	64	50	5	0	44	1.25
125366--125440	21	3.9	19	70	26	61	52	2	1	44	1.23
125591--125623	13	2.6	13	90	4	50	57	3	6	33	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125692--125751	21	2.8	20	73	11	57	36	1	5	56	1.31
126917--126991	12	6.6	11	74	18	50	53	1	0	45	1.08
126917--127018	22	5.3	19	67	24	54	52	1	0	44	1.18
127175--127219	6	7.8	6	80	9	58	48	2	0	48	1.13
127175--127219	23	2.0	23	86	0	63	48	2	0	48	1.13
127417--127457	15	2.6	16	82	14	50	46	0	0	53	1.00
127584--127638	25	2.2	26	83	3	67	47	3	0	49	1.19
127563--127646	18	4.8	17	67	26	52	45	3	1	50	1.27
127727--127773	13	3.4	14	86	11	62	42	2	0	55	1.12
127741--127810	26	2.6	28	79	16	78	44	2	1	51	1.25
127857--127898	15	2.9	14	86	13	50	45	2	2	50	1.27
128002--128055	21	2.6	20	76	5	54	50	1	0	48	1.11
128172--128206	10	3.4	10	84	7	52	40	0	2	57	1.14
128280--128321	15	2.8	15	79	10	50	42	0	2	54	1.13
128367--128410	20	2.2	20	88	8	63	45	0	2	52	1.13
128627--129033	182	2.3	180	78	5	419	41	9	8	41	1.68
129155--129498	182	1.9	178	81	5	415	42	9	9	39	1.68
129540--129644	54	2.0	53	81	12	126	51	7	8	32	1.61
129624--130678	177	5.9	174	73	13	672	39	8	10	41	1.71
128763--130357	872	1.8	856	78	8	1758	40	8	9	41	1.69
129722--130945	177	7.0	175	71	16	543	39	9	10	40	1.71
131561--132050	177	2.8	176	79	4	423	43	9	8	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131743--132399	340	1.9	338	79	6	738	43	9	7	39	1.66
132077--132565	178	2.7	177	79	8	501	41	8	8	41	1.66
132729--133877	181	6.4	179	75	7	804	39	8	9	42	1.67
134434--135048	181	3.4	180	79	7	635	40	7	9	41	1.67
134922--135175	132	1.9	132	82	1	321	42	8	9	39	1.67
134741--135361	313	2.0	313	83	5	790	41	8	9	40	1.69
135054--135542	181	2.7	182	84	5	598	40	8	9	41	1.68
134557--136042	494	3.0	494	99	0	2929	40	8	10	41	1.68
135416--135669	132	1.9	132	82	3	314	42	8	9	39	1.66
135235--135855	313	2.0	313	84	5	817	41	8	9	40	1.68
135548--136375	181	4.6	182	78	7	760	40	8	9	41	1.69
135548--136372	362	2.3	359	79	7	900	40	8	9	41	1.69
138940--139008	5	13.4	5	75	22	63	73	0	2	23	0.96
138952--139006	6	10.0	6	80	11	57	70	0	3	25	1.03
138935--138999	21	3.2	21	76	10	73	72	0	4	23	1.03
138940--139013	27	2.9	24	84	11	94	72	0	2	24	0.97
139925--139988	4	15.5	4	73	23	53	73	3	3	20	1.11
139939--139989	21	2.4	21	83	9	59	74	3	3	17	1.12
141337--141413	16	5.1	16	69	24	53	46	1	0	51	1.09
141707--141769	27	2.3	26	78	7	72	55	0	1	42	1.09
141831--141898	32	2.2	30	79	12	75	51	2	1	44	1.25
142018--142101	28	3.0	28	72	8	75	47	2	4	45	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142335--142369	14	2.6	14	86	4	54	48	0	0	51	1.00
142763--142818	8	7.5	8	72	20	50	48	0	0	51	1.00
142778--142817	14	2.9	14	88	3	55	52	0	0	47	1.00
142774--142820	22	2.1	23	88	11	71	48	0	0	51	1.00
143041--143102	29	2.1	30	82	14	76	46	4	0	48	1.23
143251--143321	18	3.7	19	80	14	67	52	0	4	43	1.20
143264--143305	19	2.3	19	91	4	68	54	0	2	42	1.13
143370--143395	12	2.2	12	100	0	52	57	0	0	42	0.98
143446--143521	32	2.5	31	79	12	84	56	0	2	40	1.13
143478--143523	21	2.2	22	80	11	60	60	0	0	39	0.97

Tables:   1   2   3   4   5