genome.fa.s434.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168259.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_49, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  171922

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 574 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87312--87362	17	2.9	17	75	18	50	50	1	0	47	1.12
87418--87457	15	2.5	16	88	8	55	47	2	0	50	1.14
87451--87523	12	6.0	12	77	16	71	54	0	0	45	0.99
87431--87520	25	3.5	27	76	20	79	53	1	0	45	1.07
87455--87529	25	3.0	24	77	16	80	56	0	0	44	0.99
87740--87788	26	1.9	25	84	12	64	48	2	0	48	1.12
87800--87862	26	2.4	27	76	10	69	49	3	1	46	1.27
88037--88096	18	3.2	19	76	17	63	46	0	3	50	1.18
88158--88186	13	2.1	14	93	6	51	31	0	3	65	1.09
88330--88374	21	2.1	21	91	4	72	57	2	0	40	1.11
88316--88369	25	2.2	24	80	9	56	55	3	0	40	1.17
88334--88388	12	4.8	12	82	13	71	60	5	0	34	1.20
90164--90200	16	2.2	18	90	9	60	59	0	2	37	1.12
90749--90862	52	2.2	52	78	15	107	50	0	0	48	1.06
90766--90844	7	11.7	7	73	21	62	54	1	0	44	1.08
90766--90869	32	3.1	34	81	15	128	53	0	0	45	1.06
90773--90867	14	6.9	14	69	21	51	52	0	0	47	1.00
90819--90988	14	11.5	14	65	25	52	51	0	1	46	1.12
90878--90983	25	4.3	25	71	16	78	50	0	0	49	1.07
90886--90987	47	2.2	43	75	23	100	51	0	0	47	1.07
90825--90986	24	6.8	24	70	19	83	50	0	1	48	1.13
91105--91197	22	4.3	20	71	23	73	48	1	0	50	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91179--91276	47	2.2	44	82	12	110	47	3	0	48	1.17
91448--91486	19	2.0	20	90	5	62	38	5	2	53	1.37
91564--91612	5	10.0	5	86	4	55	53	2	0	44	1.12
91537--91614	24	3.2	24	76	8	70	51	2	0	46	1.14
91559--91644	29	3.1	28	75	12	74	51	1	1	46	1.16
91551--91632	24	3.5	23	74	15	71	51	1	1	46	1.16
92346--92408	24	2.7	23	72	18	58	42	3	3	50	1.34
92370--92436	10	6.7	10	75	11	57	37	1	4	56	1.29
92370--92454	39	2.2	39	83	8	102	38	2	3	55	1.30
92696--92736	21	2.0	21	90	9	66	46	4	2	46	1.37
93290--93460	73	2.4	73	77	15	173	48	1	1	47	1.22
93368--93418	17	2.9	17	77	16	50	47	0	0	52	1.00
93290--93465	27	6.2	29	72	20	92	48	1	1	47	1.21
93417--93468	23	2.2	24	77	16	56	55	1	1	40	1.22
93504--93554	24	2.1	25	82	17	63	45	1	1	50	1.24
93691--93759	35	2.0	35	86	5	97	49	1	1	47	1.19
93871--93934	16	4.0	16	70	8	58	50	3	0	46	1.17
93935--94007	23	3.3	23	70	18	64	53	2	2	41	1.29
93974--94033	30	2.0	29	84	12	77	48	0	1	50	1.11
94199--94245	17	2.5	19	80	16	62	53	0	2	44	1.12
94570--94627	25	2.3	24	74	8	62	56	3	0	39	1.16
94584--94633	26	1.9	26	88	8	75	58	4	0	38	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94636--94687	18	2.8	20	75	19	58	48	1	1	48	1.24
94610--94687	36	2.2	37	82	13	92	50	2	1	46	1.23
94643--94713	23	3.0	23	75	15	65	52	4	1	42	1.29
95497--95556	26	2.5	22	76	21	66	50	0	3	46	1.18
95494--95573	34	2.4	35	77	12	87	48	0	2	48	1.14
95516--95600	14	5.6	15	66	19	52	48	0	1	50	1.08
96636--96675	19	2.1	19	86	9	55	52	0	0	47	1.00
96655--96775	16	7.8	15	70	23	65	43	1	4	50	1.31
96956--96995	19	2.1	19	85	0	53	42	0	7	50	1.30
97171--97211	16	2.6	15	88	7	55	46	0	0	53	1.00
97156--97194	20	1.9	21	84	5	53	43	0	2	53	1.14
97165--97210	16	2.6	18	77	22	53	47	0	0	52	1.00
97252--97288	16	2.2	18	85	9	51	54	2	2	40	1.29
97307--97353	24	2.0	24	83	4	60	44	0	2	53	1.12
97410--97459	22	2.3	22	79	6	57	50	0	0	50	1.00
97438--97497	17	3.5	17	70	17	52	46	0	1	51	1.10
97488--97550	21	2.9	21	85	4	81	46	4	3	46	1.40
97641--97704	20	3.3	19	76	20	60	50	4	1	43	1.32
97798--97883	20	4.4	20	74	12	72	46	2	0	51	1.13
97827--97883	17	3.2	17	72	20	53	45	1	0	52	1.11
98000--98043	22	1.9	24	81	9	56	43	4	0	52	1.22
98066--98173	26	3.9	26	72	21	69	44	2	0	51	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98150--98181	15	2.2	14	94	5	55	53	0	0	46	1.00
98352--98481	41	3.2	41	85	4	181	21	12	18	47	1.81
98875--98925	25	2.0	25	81	7	59	49	0	1	49	1.12
99761--99817	30	1.9	29	82	10	71	47	3	1	47	1.29
99941--99991	18	3.0	18	69	13	54	45	1	3	49	1.32
100065--100116	21	2.4	23	81	12	65	46	1	0	51	1.12
100865--100917	15	3.7	15	80	9	67	45	0	0	54	0.99
100889--100930	14	3.0	14	86	6	50	45	2	0	52	1.13
101115--101193	14	6.4	12	74	21	58	51	0	0	48	1.00
101711--101774	18	3.4	18	72	12	58	46	0	3	50	1.17
102018--102065	21	2.3	21	81	0	60	54	2	4	39	1.32
102319--102887	182	3.2	178	80	8	609	39	7	9	43	1.66
103326--103372	19	2.4	20	85	3	60	48	0	4	46	1.21
103458--103524	18	3.4	19	76	10	55	43	0	2	53	1.16
103762--103792	16	1.9	16	93	0	53	19	3	0	77	0.90
103818--103870	8	6.4	8	77	14	54	58	0	0	41	0.98
103835--103865	15	2.0	16	93	6	55	61	0	0	38	0.96
104092--104149	29	2.0	29	83	6	73	46	3	6	43	1.47
104125--104175	24	2.2	22	83	10	66	45	3	1	49	1.32
104282--104357	17	4.3	18	69	14	59	51	0	0	48	1.00
104296--104343	21	2.4	19	82	10	60	50	0	0	50	1.00
104345--104406	21	2.9	21	87	4	88	46	3	3	46	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104390--104425	17	2.1	18	89	5	56	47	0	2	50	1.15
104386--104445	26	2.3	27	75	16	63	50	0	1	48	1.11
104626--104707	19	4.2	20	67	22	50	47	3	0	48	1.19
104690--104731	22	2.0	21	85	4	57	47	2	0	50	1.14
104721--104770	19	2.6	19	78	9	57	42	2	4	52	1.31
104850--104897	17	2.9	17	82	11	57	39	0	2	58	1.10
104902--104939	16	2.4	16	86	4	51	47	2	2	47	1.30
104965--105009	20	2.1	22	84	8	58	42	4	2	51	1.34
104962--105036	28	2.6	28	79	16	73	46	4	1	48	1.29
105073--105124	17	3.1	16	72	22	52	46	1	0	51	1.12
105157--105203	20	2.5	19	86	10	69	53	0	2	44	1.12
105938--105968	16	1.9	16	93	0	53	48	0	9	41	1.36
106078--106152	24	2.9	27	71	17	68	45	4	0	50	1.20
106067--106140	31	2.5	30	79	12	75	45	1	1	51	1.18
107686--107746	22	3.0	20	73	13	54	45	3	0	50	1.17
108587--108613	14	1.9	14	100	0	54	29	0	3	66	1.09
108623--108651	14	2.1	14	93	6	51	58	0	0	41	0.98
108670--108702	15	2.2	15	94	0	57	54	0	0	45	0.99
108709--108790	35	2.3	35	83	10	96	45	2	2	50	1.28
108827--108882	18	3.2	18	78	19	64	51	0	1	46	1.11
108860--108972	45	2.5	44	78	17	117	42	3	0	53	1.24
108938--108974	14	2.6	15	83	12	51	40	2	0	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108935--108974	17	2.4	17	91	0	62	40	2	0	57	1.12
109111--109135	13	1.9	13	100	0	50	56	0	4	40	1.18
109095--109151	21	2.9	19	80	12	71	54	0	1	43	1.10
110401--110459	20	2.8	20	70	14	57	52	0	1	45	1.10
110892--110937	10	4.2	11	76	18	51	45	0	2	52	1.13
111316--112011	179	3.9	177	77	7	647	39	8	9	42	1.68
112104--112143	19	2.2	18	86	13	55	45	0	0	55	0.99
112780--112886	23	4.9	22	76	18	98	48	0	0	50	1.07
112802--112852	16	3.1	16	75	24	52	41	0	1	56	1.10
112751--112853	19	5.5	19	71	24	76	45	0	0	52	1.13

Tables:   1   2   3   4   5