genome.fa.s12.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397265.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_146.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8065533

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  1  of  18  ( 2130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1279--1341	20	3.3	20	91	6	96	53	19	3	23	1.59
12109--12210	47	2.2	46	81	8	118	4	18	11	64	1.43
17401--17443	21	2.0	21	82	8	52	37	13	6	41	1.72
20986--21060	29	2.6	28	82	4	87	45	8	13	33	1.72
20976--21075	29	3.4	28	78	6	83	38	9	12	41	1.74
33360--33417	15	3.4	16	76	17	55	22	1	8	67	1.27
41521--41581	32	1.9	32	100	0	122	31	6	29	32	1.83
53928--53953	12	2.2	12	100	0	52	76	0	23	0	0.78
56515--56562	19	2.6	19	90	3	71	56	0	4	39	1.19
57315--57359	21	2.1	22	91	4	74	60	0	37	2	1.09
61704--61741	19	2.0	19	100	0	76	21	26	0	52	1.47
66750--66833	43	2.0	43	87	0	123	30	16	13	39	1.87
68291--68332	21	2.0	21	90	0	66	23	16	23	35	1.95
75500--75830	167	2.0	167	97	0	626	35	16	9	37	1.82
79347--79417	34	2.1	34	89	0	106	36	29	12	21	1.90
86794--86823	15	2.0	15	93	0	51	43	16	6	33	1.74
86817--86943	50	2.6	50	82	3	141	32	17	21	29	1.96
87250--87283	14	2.4	14	85	0	50	44	0	5	50	1.26
111162--111211	24	2.1	24	88	0	73	32	24	6	38	1.79
117399--117441	22	2.0	22	95	0	77	34	9	13	41	1.77
120338--120404	34	2.0	34	88	5	100	40	28	11	19	1.87
120377--120464	29	3.0	29	68	6	70	29	25	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131193--131478	77	3.7	77	80	4	285	26	21	19	32	1.97
131417--131592	74	2.4	74	89	0	271	22	19	23	34	1.97
136008--136054	21	2.2	21	88	0	67	27	19	21	31	1.97
138755--138925	81	2.1	81	84	4	220	25	32	15	26	1.96
138755--138948	81	2.4	80	80	6	196	23	34	15	26	1.95
139577--140013	151	2.9	151	79	2	385	32	16	17	34	1.92
141528--141574	23	2.0	23	87	0	67	21	29	19	29	1.97
141674--141737	23	2.8	23	90	0	92	26	29	9	34	1.88
141698--141748	23	2.2	23	82	0	57	29	31	11	27	1.92
141882--141936	23	2.4	23	90	0	83	27	34	9	29	1.87
162969--162993	2	12.5	2	100	0	50	48	0	0	52	1.00
168981--169189	103	2.0	106	87	2	307	37	11	23	27	1.89
179315--179356	20	2.1	20	86	0	57	76	11	0	11	1.03
184496--184554	25	2.4	25	97	0	109	22	10	23	44	1.83
184555--184608	26	2.1	26	85	0	72	35	11	5	48	1.62
184798--184918	53	2.3	53	86	0	161	28	14	12	44	1.81
185458--185498	20	2.0	21	90	4	66	46	0	0	53	1.00
186813--186882	18	3.9	17	74	10	61	74	1	24	0	0.90
186933--187041	15	6.7	15	76	13	74	73	0	23	1	0.99
186804--187146	159	2.2	161	79	12	381	65	3	24	6	1.34
186963--187040	18	4.2	18	72	9	59	74	1	23	1	0.97
187097--187136	17	2.3	18	86	4	55	75	2	22	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187095--187162	26	2.6	26	79	11	84	75	2	22	0	0.94
198208--198233	12	2.2	12	100	0	52	30	0	26	42	1.56
200931--200978	10	4.6	10	82	10	60	85	0	12	2	0.69
200931--200978	21	2.2	21	88	3	69	85	0	12	2	0.69
205419--205449	16	1.9	16	93	0	53	58	6	16	19	1.59
205893--205950	21	2.7	21	81	2	71	24	17	20	37	1.93
221537--221593	21	2.7	21	91	0	87	22	19	26	31	1.98
221820--221859	21	1.9	21	85	10	55	20	12	27	40	1.88
224158--224211	20	2.7	20	97	0	99	33	7	18	40	1.78
226494--226606	36	3.2	35	72	14	97	28	29	20	22	1.98
226634--226819	91	2.0	91	84	2	239	32	23	18	25	1.97
233714--233790	39	2.0	39	86	0	109	38	18	16	25	1.92
238284--238431	74	2.0	74	80	5	165	22	18	18	41	1.91
247458--247618	74	2.2	74	81	2	189	24	17	14	42	1.87
247458--247643	74	2.5	73	76	6	185	24	17	14	43	1.86
257433--257532	50	2.0	50	100	0	200	42	4	22	32	1.72
262444--262490	25	2.0	23	84	12	60	29	10	25	34	1.90
264868--264908	21	2.1	19	86	9	55	26	0	9	63	1.25
270198--270336	43	3.2	43	86	7	167	36	25	10	26	1.89
289781--289942	77	2.1	77	86	6	222	40	14	8	37	1.75
292669--292879	36	6.0	36	79	7	204	45	13	6	34	1.69
312388--312564	71	2.5	71	83	5	225	35	15	11	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324022--324054	15	2.1	16	88	5	50	33	21	15	30	1.94
333179--333203	11	2.3	11	100	0	50	72	0	0	28	0.86
333895--333954	4	16.8	4	72	27	55	53	0	46	0	1.00
333895--333949	10	5.6	10	77	22	55	52	0	47	0	1.00
333894--333951	17	3.5	17	95	4	102	53	0	46	0	1.00
339146--339249	54	1.9	55	96	2	192	30	15	23	30	1.95
339155--339268	54	2.1	55	85	4	151	30	18	21	28	1.97
340842--340894	25	2.1	25	82	0	61	24	30	18	26	1.98
342349--342381	11	3.1	11	91	4	50	0	30	0	69	0.88
346648--346831	36	5.2	36	81	4	207	34	7	14	44	1.72
346676--346831	71	2.2	72	83	2	190	34	8	14	42	1.75
350754--350805	20	2.5	20	68	3	50	3	9	17	69	1.31
354699--354767	21	3.2	20	80	13	59	65	0	2	31	1.08
354705--354768	22	2.9	22	81	6	67	65	0	3	31	1.08
356191--356265	38	1.9	39	84	7	100	30	13	22	33	1.92
359613--359666	26	2.0	27	82	10	67	29	14	11	44	1.80
360492--360532	2	21.0	2	85	5	57	43	0	4	51	1.23
360776--360820	19	2.2	21	84	7	58	20	4	26	48	1.68
368264--368378	55	2.1	54	86	1	158	39	19	12	29	1.88
375885--376125	77	3.1	75	81	9	297	38	12	8	39	1.75
386507--386550	21	2.0	22	91	4	72	31	0	6	61	1.22
411249--411421	36	5.0	34	79	6	152	42	12	8	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424163--424206	19	2.3	19	92	0	70	45	20	2	31	1.64
433000--433041	18	2.3	18	88	8	59	42	2	0	54	1.13
454366--454425	18	3.3	18	69	17	61	48	11	5	35	1.61
454374--454541	36	4.9	35	81	7	193	45	10	5	38	1.62
454345--454538	107	1.9	102	83	7	255	44	10	6	38	1.64
456201--456240	20	2.1	19	85	4	53	40	15	7	37	1.75
460608--460756	50	3.0	50	96	1	264	33	13	10	42	1.77
460513--460765	28	9.4	28	75	13	255	36	13	9	40	1.78
470643--470829	73	2.6	74	81	4	211	22	20	16	40	1.91
500973--501006	15	2.1	15	89	10	50	76	0	20	2	0.92
511942--512487	277	2.0	277	90	0	858	42	17	5	32	1.73
513063--513856	397	2.0	397	92	1	1313	28	18	17	34	1.93
526324--526428	36	2.9	36	76	13	99	27	21	19	31	1.97
528446--528713	27	9.9	27	74	7	186	38	16	11	33	1.85
528446--528711	55	4.9	54	72	6	155	38	16	11	33	1.85
528504--528707	78	2.5	81	78	7	211	39	16	10	33	1.83
528677--528726	27	2.0	26	88	11	77	36	20	10	34	1.86
536127--536176	17	2.8	17	87	6	64	46	8	0	46	1.32
536582--536626	20	2.3	20	85	11	58	46	17	2	33	1.61
540442--540478	2	18.5	2	94	0	65	54	0	0	45	1.00
549966--550005	16	2.5	16	83	0	53	37	0	5	57	1.21
562423--562461	19	1.9	19	85	10	51	43	10	5	41	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564238--564273	2	18.0	2	100	0	72	50	0	0	50	1.00
570212--570249	18	2.1	19	85	5	51	13	31	5	50	1.63
574480--574583	39	2.6	40	85	7	131	16	17	21	45	1.86
582056--582259	41	5.2	39	73	11	166	17	16	22	44	1.87
582091--582234	41	3.6	41	77	11	170	17	18	21	43	1.88
582056--582256	80	2.5	80	85	4	266	16	16	21	44	1.87
582966--582995	14	2.1	14	100	0	60	20	0	6	73	1.05
584327--584367	16	2.5	17	81	18	52	70	0	29	0	0.87
586815--586873	19	3.3	18	77	11	59	0	35	1	62	1.05
586798--586878	23	3.7	23	74	17	82	1	35	1	61	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18