genome.fa.s12.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397265.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_146.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8065533

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  7  of  18  ( 2130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2839494--2839668	22	7.8	23	75	8	128	38	18	12	31	1.87
2839494--2839636	44	3.2	43	80	5	142	38	17	11	32	1.86
2839510--2839650	44	3.2	44	81	4	160	42	17	11	29	1.83
2841184--2841218	17	2.1	17	88	0	52	37	5	14	42	1.69
2841443--2841486	20	2.2	20	84	8	54	61	0	2	36	1.09
2842063--2842121	27	2.1	28	90	3	93	57	1	3	37	1.25
2842158--2842257	42	2.4	42	81	6	114	51	4	2	43	1.32
2842219--2842289	27	2.9	26	78	14	80	50	2	2	43	1.31
2842146--2842310	70	2.5	64	82	7	186	50	2	1	45	1.25
2848865--2848892	4	7.0	4	100	0	56	25	0	0	75	0.81
2853343--2853399	29	2.0	29	89	0	87	24	12	15	47	1.80
2855316--2855344	2	14.5	2	100	0	58	48	0	0	51	1.00
2856137--2856207	8	9.1	8	86	9	94	0	35	1	63	1.03
2856153--2856200	4	12.2	4	77	4	53	0	33	0	66	0.92
2863045--2863089	20	2.2	20	80	0	54	40	4	20	35	1.72
2870308--2870343	18	2.0	18	94	0	63	36	11	30	22	1.89
2873656--2873751	45	2.1	45	84	7	124	38	34	1	26	1.63
2873918--2873954	19	1.9	19	88	0	56	40	5	27	27	1.78
2881359--2881422	32	2.0	32	100	0	128	25	21	12	40	1.88
2890265--2890298	14	2.4	14	90	9	52	2	17	0	79	0.86
2890924--2890955	14	2.3	14	94	0	55	65	9	6	18	1.42
2890947--2891006	25	2.4	25	83	10	70	63	15	5	16	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2902484--2902516	17	2.0	16	94	5	57	30	12	33	24	1.91
2914612--2914770	34	4.4	35	71	16	112	37	23	13	25	1.92
2918772--2918879	54	2.0	54	100	0	216	31	11	9	48	1.70
2948886--2948916	2	15.5	2	100	0	62	48	0	0	51	1.00
2949214--2949245	2	16.0	2	100	0	64	50	0	0	50	1.00
2949557--2949612	2	28.0	2	100	0	112	50	0	0	50	1.00
2950838--2950873	2	18.0	2	94	0	63	0	47	2	50	1.15
2961609--2961642	17	2.0	17	88	11	52	47	14	0	38	1.45
2961765--2961918	30	5.2	30	74	9	122	38	10	9	41	1.72
2965754--2965889	45	3.1	43	88	4	173	60	10	24	5	1.49
2965770--2965904	45	3.0	45	88	3	175	60	9	22	6	1.51
2967639--2967686	17	2.8	17	87	6	71	41	14	22	20	1.89
2974289--2974534	68	3.6	68	76	3	167	33	18	10	37	1.85
2976153--2976300	79	1.9	79	89	0	233	31	16	14	37	1.89
2981530--2981569	19	2.2	18	90	4	62	52	5	12	30	1.60
2984621--2984797	65	2.7	66	77	11	173	36	11	18	33	1.87
2992890--2992924	17	2.1	17	100	0	70	22	11	28	37	1.89
3002753--3003007	35	7.3	34	78	8	273	44	12	8	34	1.73
3002753--3003007	71	3.7	70	80	4	293	44	12	8	34	1.73
3002739--3003007	106	2.6	106	85	6	379	43	12	8	35	1.73
3004667--3004722	29	1.9	29	82	7	69	69	1	10	17	1.26
3008112--3008155	21	2.1	22	79	12	56	61	6	2	29	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3012531--3012650	58	2.1	57	90	1	186	33	7	20	39	1.80
3014988--3015036	25	2.0	25	87	0	71	24	28	20	26	1.99
3014994--3015044	25	2.0	25	84	0	66	29	29	19	21	1.98
3016905--3016937	4	8.0	4	93	6	57	0	24	0	75	0.80
3020070--3020117	21	2.3	21	92	0	78	41	6	16	35	1.74
3021677--3021743	35	1.9	35	84	0	89	35	23	10	29	1.89
3036576--3036614	8	4.8	8	81	6	51	61	0	0	38	0.96
3039071--3039207	61	2.3	60	82	5	159	29	18	27	24	1.98
3046644--3047024	62	6.2	62	76	3	165	35	16	17	30	1.92
3046691--3046772	31	2.6	31	68	11	78	36	13	14	35	1.86
3046644--3046970	62	5.3	61	78	7	266	36	15	17	30	1.92
3048653--3048688	17	2.2	17	90	5	56	75	0	5	19	1.00
3054455--3054495	21	2.0	21	85	9	57	4	29	0	65	1.13
3061854--3061902	19	2.5	20	80	9	57	32	16	22	28	1.95
3062393--3062436	20	2.2	20	95	0	79	29	22	11	36	1.89
3072204--3072237	14	2.3	15	90	5	52	11	14	2	70	1.27
3073559--3073625	35	1.9	35	81	0	80	34	22	8	34	1.85
3074460--3074499	19	2.1	19	86	9	55	2	32	5	60	1.32
3075387--3075417	14	2.3	14	94	5	55	12	0	16	70	1.16
3076718--3076860	73	2.0	72	90	1	223	34	23	15	26	1.94
3076968--3077047	31	2.9	26	71	16	70	37	16	17	28	1.91
3076975--3077036	31	2.0	31	87	0	88	33	17	17	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3080131--3080161	13	2.4	13	94	0	53	12	12	16	58	1.64
3080755--3081371	76	8.2	75	78	5	530	24	18	19	38	1.93
3080896--3081116	71	3.0	71	76	9	212	24	17	19	38	1.93
3080673--3081401	223	3.2	222	79	4	696	24	17	19	38	1.93
3080757--3081442	152	4.6	152	77	5	549	24	18	19	37	1.93
3085754--3085797	21	2.1	21	86	0	61	20	27	9	43	1.82
3085795--3086320	23	22.8	23	72	5	202	23	31	9	35	1.88
3085795--3086368	46	12.5	46	75	8	317	23	31	9	35	1.87
3085898--3086281	69	5.6	68	73	7	240	23	31	9	35	1.87
3086100--3086271	93	1.8	93	85	2	238	26	31	8	33	1.87
3085795--3086317	138	3.8	139	74	6	364	23	31	9	35	1.88
3089392--3089444	27	2.0	27	84	0	70	39	16	15	28	1.89
3097292--3097399	38	2.9	38	82	8	125	36	23	11	29	1.89
3098298--3098338	15	2.7	15	73	26	50	34	0	14	51	1.43
3105713--3105835	35	3.5	35	78	2	129	30	6	15	47	1.70
3107801--3107873	29	2.4	29	81	4	83	43	12	10	32	1.77
3119284--3119310	14	1.9	14	100	0	54	25	37	0	37	1.57
3133754--3133780	13	2.1	13	100	0	54	29	25	7	37	1.83
3149973--3150054	35	2.3	35	87	0	119	31	12	25	30	1.92
3154147--3154225	8	10.1	8	77	8	74	59	1	36	2	1.19
3159418--3159467	21	2.4	21	86	0	64	28	4	18	50	1.65
3159435--3159475	21	2.0	21	90	0	64	26	0	17	56	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3162170--3162196	12	2.2	12	100	0	54	18	22	25	33	1.97
3162263--3162300	20	2.1	18	85	14	51	34	23	13	28	1.92
3166256--3166293	2	19.0	2	88	0	58	50	0	0	50	1.00
3171219--3171353	73	1.9	73	87	1	200	37	17	19	26	1.93
3180075--3180241	73	2.3	73	78	4	176	39	14	17	27	1.90
3194583--3194745	76	2.1	76	85	2	220	38	11	9	41	1.72
3224953--3224990	18	2.1	18	85	9	51	65	13	15	5	1.43
3227577--3227616	21	1.9	21	90	10	64	42	25	7	25	1.80
3227839--3227878	18	2.2	19	86	4	55	45	27	12	15	1.82
3237101--3237326	71	3.2	69	79	4	247	31	5	13	45	1.66
3237071--3237326	35	7.3	35	76	5	241	30	5	14	45	1.67
3237261--3237345	35	2.4	35	86	0	107	38	4	12	43	1.64
3252496--3252528	15	2.1	16	94	5	59	51	15	12	21	1.75
3260940--3261076	72	1.9	72	81	0	166	32	13	21	32	1.93
3260940--3261092	36	4.2	36	81	0	135	30	13	23	32	1.93
3261010--3261113	36	2.9	36	84	8	113	34	16	19	29	1.93
3262302--3262341	20	2.0	19	85	9	53	27	5	32	35	1.79
3262775--3262833	20	2.9	21	76	5	66	30	13	16	38	1.88
3262775--3262840	21	3.2	21	78	4	71	31	13	16	37	1.88
3263812--3264071	68	3.8	68	79	1	279	35	10	17	36	1.83
3264256--3264301	24	1.9	24	90	0	74	32	4	21	41	1.73
3265142--3265185	21	2.0	22	86	4	63	29	0	9	61	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3268327--3268360	16	2.2	16	89	5	52	17	2	8	70	1.25
3268504--3268546	21	2.1	20	83	12	52	30	11	11	46	1.76
3270437--3270633	45	4.4	44	79	8	175	32	23	14	28	1.94
3270469--3270633	90	1.8	90	86	0	240	33	23	13	29	1.93
3270470--3270747	45	6.3	44	72	12	203	33	23	14	29	1.93
3276742--3276778	1	37.0	1	100	0	74	0	0	0	100	0.00
3280823--3280984	82	2.0	82	90	2	254	38	14	9	37	1.79
3283431--3283590	82	2.0	82	91	0	257	28	13	17	40	1.87
3291168--3291192	2	12.5	2	100	0	50	52	0	0	48	1.00
3292026--3292054	3	9.7	3	100	0	58	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18