genome.fa.s12.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397265.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_146.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8065533

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7648985--7649012	3	9.3	3	100	0	56	35	0	0	64	0.94
7653656--7653706	2	26.0	2	96	4	95	49	0	0	50	1.00
7655622--7655917	156	1.9	152	88	2	439	34	15	13	36	1.87
7660473--7660526	23	2.6	19	77	16	54	57	5	3	33	1.40
7662322--7662667	173	2.0	173	93	0	593	43	15	12	28	1.83
7662631--7662762	63	2.1	63	98	0	255	38	12	12	36	1.81
7670833--7670860	2	14.0	2	100	0	56	50	0	0	50	1.00
7686220--7686247	5	5.6	5	100	0	56	60	0	0	39	0.97
7686211--7686253	15	2.9	15	83	16	63	58	0	0	41	0.98
7695370--7695407	19	2.0	20	89	5	60	63	21	13	2	1.42
7705014--7705047	2	17.0	2	100	0	68	50	0	0	50	1.00
7710382--7710591	109	1.9	109	94	0	366	32	26	6	34	1.82
7713457--7713498	16	2.5	17	84	7	59	54	0	0	45	0.99
7713457--7713502	14	2.9	16	78	12	51	54	0	0	45	0.99
7713885--7713929	18	2.5	18	82	10	56	73	6	2	17	1.15
7714615--7714683	9	8.3	9	68	16	51	18	2	1	76	0.98
7714615--7714683	32	2.1	31	86	10	93	18	2	1	76	0.98
7714647--7714680	15	2.3	15	90	5	52	20	0	0	79	0.73
7714615--7714684	35	2.0	34	83	8	88	20	2	1	75	1.00
7721249--7721656	80	5.1	80	86	1	575	38	16	18	25	1.92
7730998--7731731	1	734.0	1	91	0	1135	1	94	1	2	0.36
7733057--7733123	33	2.0	33	97	0	125	28	22	5	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7737233--7737291	27	2.2	27	81	0	73	57	0	1	40	1.09
7738336--7738369	16	2.1	16	88	5	50	61	0	0	38	0.96
7739196--7739229	12	2.7	13	86	9	52	76	14	5	2	1.09
7739569--7739622	23	2.3	24	81	9	67	53	1	1	42	1.22
7755441--7755964	174	3.0	175	98	0	1007	30	17	21	29	1.96
7757773--7757804	13	2.3	15	89	10	50	68	6	0	25	1.12
7757974--7758045	17	4.2	17	75	15	60	70	0	5	23	1.08
7757988--7758046	7	8.4	7	76	14	59	69	0	3	27	1.04
7758010--7758044	3	11.7	3	88	11	54	71	0	0	28	0.86
7774018--7774050	6	5.8	6	86	13	52	69	0	30	0	0.88
7774156--7774207	27	1.9	27	100	0	104	34	3	46	15	1.64
7781075--7781099	2	12.5	2	100	0	50	0	0	48	52	1.00
7806825--7806862	17	2.2	17	95	0	67	39	26	5	28	1.78
7809354--7809384	15	2.1	15	100	0	62	25	12	6	54	1.62
7820504--7820566	31	2.0	31	84	6	83	33	1	3	61	1.21
7823586--7823615	2	15.0	2	100	0	60	50	0	0	50	1.00
7823615--7823665	2	25.5	2	100	0	102	50	0	49	0	1.00
7826425--7826873	223	2.0	225	93	0	776	30	13	18	36	1.90
7840472--7840504	2	17.0	2	93	6	59	51	0	0	48	1.00
7845403--7845429	5	5.4	5	100	0	54	0	40	0	59	0.98
7865932--7866055	60	2.1	59	80	6	133	40	8	16	35	1.78
7881626--7881654	14	2.0	15	93	6	51	0	55	3	41	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7884206--7884291	33	2.6	32	83	12	102	29	4	0	66	1.12
7890674--7890704	2	15.5	2	100	0	62	48	0	0	51	1.00
7891651--7891684	14	2.3	15	85	10	52	44	14	8	32	1.76
7892066--7892090	3	8.3	3	100	0	50	0	32	0	68	0.90
7892400--7892461	18	3.4	18	82	12	74	1	30	8	59	1.36
7892400--7892449	3	16.7	3	82	0	64	2	32	4	62	1.25
7897419--7897475	27	2.1	27	90	0	87	15	17	12	54	1.71
7899868--7899896	2	14.5	2	100	0	58	51	0	0	48	1.00
7904865--7904917	27	1.9	28	84	3	72	60	15	3	20	1.50
7905329--7905382	21	2.6	21	88	2	74	46	0	5	48	1.25
7905344--7905387	21	2.1	21	100	0	88	45	0	4	50	1.22
7906261--7906302	2	21.0	2	100	0	84	50	0	0	50	1.00
7909249--7909404	80	1.9	80	81	3	188	23	30	16	28	1.96
7909420--7909480	26	2.3	26	83	10	63	29	27	8	34	1.86
7912549--7912581	2	16.5	2	100	0	66	48	0	0	51	1.00
7913191--7913241	17	2.9	17	85	8	59	47	5	0	47	1.26
7943656--7943702	22	2.1	23	88	4	69	53	2	6	38	1.39
7943656--7943718	23	2.8	23	81	11	60	50	1	6	41	1.37
7958977--7959004	6	4.7	6	100	0	56	0	35	14	50	1.43
7961956--7962025	27	2.6	27	77	8	70	71	1	1	25	1.03
7962057--7962094	17	2.3	17	86	13	53	68	0	0	31	0.90
7962054--7962135	31	2.5	32	83	11	96	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7962057--7962200	30	4.5	32	67	24	81	64	0	2	33	1.05
7962054--7962198	70	2.1	71	81	3	168	64	0	2	33	1.05
7962354--7962395	15	2.8	15	88	0	57	35	26	7	30	1.83
7967320--7967356	2	18.5	2	94	0	65	51	2	0	45	1.15
7968828--7968919	35	2.6	36	91	3	150	21	54	5	18	1.64
7973739--7975321	400	4.0	399	97	2	2918	16	36	24	21	1.94
7973998--7975056	129	8.0	130	70	16	791	17	36	24	22	1.95
7973739--7975321	797	2.0	789	96	3	2900	16	36	24	21	1.94
7978014--7978044	5	6.0	5	92	7	53	38	22	0	38	1.54
7985874--7985930	4	14.8	4	72	20	50	52	0	0	47	1.00
7985863--7985923	12	4.6	14	77	20	60	49	0	0	50	1.00
7985888--7985926	16	2.5	15	95	4	69	53	0	0	46	1.00
7985872--7985919	11	4.3	11	80	15	53	50	0	0	50	1.00
7985998--7986079	30	2.5	32	84	9	96	58	0	0	41	0.98
7986007--7986054	24	2.0	24	88	12	71	62	0	0	37	0.95
8011615--8011668	2	27.0	2	96	0	99	50	48	0	1	1.11
8030706--8030736	3	10.3	3	92	0	53	67	0	0	32	0.91
8034245--8034286	18	2.3	18	80	8	50	4	19	4	71	1.22
8056942--8057047	5	20.4	5	72	16	56	69	0	0	29	0.94
8056955--8057083	33	3.9	33	77	11	113	68	0	1	30	0.99
8056996--8057083	33	2.6	34	87	3	115	69	0	1	29	0.96
8057026--8057094	33	2.2	29	77	20	77	65	1	2	30	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8057147--8057199	19	2.7	19	77	16	63	52	1	0	45	1.11
8060858--8060925	34	2.0	34	100	0	136	29	17	20	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!