genome.fa.s12.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397265.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_146.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8065533

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  8  of  18  ( 2130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3292208--3292305	45	2.2	45	81	7	110	42	11	4	41	1.59
3292467--3292567	42	2.3	44	86	5	143	45	8	0	45	1.34
3292456--3292699	129	1.9	130	83	10	320	43	8	4	43	1.54
3292149--3292706	265	2.1	270	77	9	592	44	9	5	40	1.61
3295486--3295544	30	2.0	30	93	0	100	13	25	5	55	1.58
3297420--3297464	21	2.1	21	100	0	90	28	8	17	44	1.79
3304884--3304929	20	2.3	20	78	14	51	45	2	8	43	1.47
3307650--3308552	171	5.3	172	84	6	1121	39	7	6	46	1.59
3307652--3308552	86	10.7	86	85	4	1147	39	7	6	46	1.59
3307927--3308552	257	2.4	258	87	2	920	39	7	6	46	1.58
3323445--3323590	35	4.2	35	86	3	197	34	28	10	26	1.90
3331061--3331419	177	2.0	177	93	0	619	28	20	7	42	1.79
3341400--3341429	15	2.0	15	93	0	51	16	6	6	70	1.31
3342103--3342185	30	2.8	30	77	0	103	30	10	10	48	1.72
3344615--3344657	16	2.7	16	100	0	86	20	51	4	23	1.66
3353190--3353225	18	2.0	19	89	10	58	61	2	5	30	1.33
3361960--3362072	58	1.9	58	83	3	147	34	13	15	36	1.87
3368483--3368588	54	2.0	52	85	7	142	31	35	8	24	1.85
3369167--3369197	16	1.9	16	93	0	53	38	6	6	48	1.55
3369304--3369351	20	2.4	21	86	6	64	29	25	8	37	1.85
3372516--3372589	31	2.4	31	93	2	130	58	2	4	35	1.31
3373134--3373296	73	2.2	73	80	6	195	41	16	17	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3374793--3374828	18	1.9	19	88	5	56	72	8	19	0	1.10
3388646--3388715	37	1.9	37	85	2	97	38	8	8	44	1.66
3392945--3392988	21	2.1	21	82	0	52	38	6	13	40	1.71
3396622--3396677	20	2.8	20	76	10	62	46	1	5	46	1.36
3397363--3397392	14	2.2	13	94	5	51	63	0	0	36	0.95
3397690--3397729	21	2.0	20	85	5	53	45	10	7	37	1.66
3406404--3406546	38	3.8	38	80	6	148	30	21	16	31	1.96
3410370--3410408	16	2.4	17	83	12	55	23	2	5	69	1.21
3413709--3413837	50	2.6	50	77	10	131	28	11	26	33	1.91
3414890--3414933	11	3.8	12	82	11	56	9	20	0	70	1.14
3418687--3418730	21	2.0	22	91	4	72	31	0	6	61	1.22
3421275--3421521	123	2.0	123	88	3	363	36	15	17	30	1.91
3425648--3425733	15	5.5	15	67	23	52	25	1	6	66	1.24
3453727--3453764	16	2.3	17	86	4	51	55	5	5	34	1.45
3457223--3457288	30	2.2	30	100	0	132	34	3	30	31	1.73
3474520--3474630	32	3.4	32	83	1	132	25	17	19	37	1.93
3474877--3474981	48	2.2	48	84	3	140	25	16	18	40	1.90
3474890--3475044	46	3.3	47	80	7	154	20	14	20	45	1.85
3493159--3493198	21	2.0	20	85	5	53	30	5	20	45	1.72
3493173--3493226	21	2.7	21	74	8	58	29	7	16	46	1.74
3493195--3493234	21	1.9	21	84	0	53	32	7	10	50	1.64
3494643--3494687	21	2.1	22	88	12	67	75	2	15	6	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3494787--3494841	8	7.2	8	80	12	55	61	0	36	1	1.06
3494787--3494841	16	3.7	15	83	11	69	61	0	36	1	1.06
3497853--3497887	12	3.0	12	91	4	54	25	8	5	60	1.49
3501869--3501917	20	2.5	20	96	0	89	46	0	18	34	1.49
3507005--3507197	96	2.0	96	98	0	377	43	19	7	30	1.77
3508840--3508882	14	3.1	14	82	0	50	0	25	0	74	0.82
3508840--3508882	21	2.0	21	86	0	59	0	25	0	74	0.82
3509865--3509905	18	2.3	18	87	4	57	36	4	0	58	1.20
3531749--3531826	33	2.4	33	80	0	102	37	7	17	37	1.79
3535151--3535234	37	2.2	38	83	10	102	40	28	9	21	1.84
3536424--3536526	35	3.0	34	78	13	111	33	19	12	33	1.89
3536424--3536556	71	1.9	70	82	4	169	32	19	14	33	1.92
3538113--3538156	13	3.5	13	77	22	58	34	22	4	38	1.75
3538112--3538167	24	2.3	24	100	0	112	33	23	3	39	1.72
3538126--3538167	11	3.6	11	77	22	50	35	23	2	38	1.68
3539249--3539287	14	2.7	15	84	7	55	0	30	0	69	0.89
3539222--3539284	21	3.0	22	80	13	78	1	34	0	63	1.04
3553528--3553574	21	2.2	22	88	3	69	61	8	0	29	1.25
3559796--3559851	24	2.2	25	90	6	87	33	7	33	25	1.83
3583571--3583613	22	2.0	22	85	0	59	25	37	16	20	1.93
3587964--3588029	26	2.6	25	74	6	62	36	21	13	28	1.91
3589306--3589365	28	2.1	28	93	0	102	53	11	16	18	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3603860--3603888	12	2.4	12	100	0	58	34	24	24	17	1.96
3604169--3604213	21	2.1	21	95	0	81	44	11	20	24	1.83
3610507--3610640	71	1.9	70	82	1	169	33	17	8	40	1.81
3610768--3610837	27	2.6	27	76	19	83	37	14	10	38	1.79
3615441--3615511	30	2.4	29	81	6	88	11	35	26	26	1.90
3617931--3617971	17	2.5	17	80	15	50	56	7	17	19	1.64
3619424--3619556	62	2.1	62	92	0	221	36	15	15	33	1.88
3619845--3619896	19	2.5	21	75	18	63	36	5	5	51	1.50
3621142--3621228	42	2.1	42	84	0	111	34	8	20	36	1.82
3625492--3625591	5	20.4	5	78	11	93	24	1	0	75	0.87
3625480--3625603	50	2.4	51	81	13	139	25	0	0	74	0.88
3625479--3625603	14	8.6	14	74	12	76	24	0	0	74	0.87
3631299--3631366	26	2.6	26	88	0	91	27	22	16	33	1.95
3636579--3636630	25	2.1	25	85	0	68	63	13	7	15	1.51
3639902--3639942	21	2.0	21	85	9	57	63	12	2	21	1.40
3643807--3643949	71	2.0	70	82	6	173	22	22	13	41	1.89
3650939--3650982	21	2.0	22	82	4	54	29	2	6	61	1.34
3662669--3662710	21	2.0	21	100	0	84	42	23	4	28	1.74
3667810--3667876	34	1.9	36	84	6	93	59	0	1	38	1.06
3671218--3671242	13	1.9	13	100	0	50	48	0	28	24	1.52
3675115--3675148	16	2.1	16	88	0	50	2	35	0	61	1.11
3677062--3677123	29	2.1	29	84	0	79	32	27	14	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3677509--3677663	72	2.2	72	86	0	211	23	16	17	43	1.88
3678643--3678671	15	1.9	15	100	0	58	34	0	3	62	1.12
3679707--3679780	36	2.0	37	86	2	105	40	6	14	37	1.73
3682200--3682258	29	2.0	29	93	0	100	37	6	6	49	1.56
3683831--3683878	19	2.6	19	90	3	71	39	4	0	56	1.19
3686016--3686077	31	2.0	31	96	0	115	25	11	22	40	1.87
3698572--3698631	27	2.2	27	100	0	120	48	6	23	21	1.74
3698834--3698899	29	2.3	29	78	5	80	48	6	25	19	1.72
3699133--3699250	35	3.4	35	79	9	141	19	14	22	43	1.87
3699111--3699254	70	2.1	70	85	5	193	20	14	20	44	1.86
3700408--3700443	2	18.0	2	100	0	72	50	0	0	50	1.00
3702604--3702636	16	2.0	17	94	5	59	15	12	0	72	1.12
3702957--3703029	18	4.1	18	71	7	67	21	10	20	46	1.81
3703773--3703821	25	2.0	24	84	4	62	36	12	22	28	1.90
3705872--3705994	35	3.5	35	78	2	131	17	13	21	47	1.81
3705894--3705970	34	2.2	35	86	2	102	20	14	24	40	1.90
3712166--3712208	19	2.0	21	83	16	54	34	6	9	48	1.62
3714408--3714471	32	2.0	32	96	0	119	20	6	20	53	1.67
3724568--3724642	33	2.3	33	88	4	107	26	16	12	45	1.82
3729606--3729665	30	2.0	30	83	0	75	43	6	21	28	1.78
3730879--3730952	31	2.4	31	97	0	139	21	4	18	55	1.59
3730879--3730968	31	2.9	31	90	1	101	22	6	20	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3734599--3734672	21	3.5	21	83	0	76	41	14	21	21	1.89
3736506--3736541	3	12.0	3	93	0	63	33	30	2	33	1.72
3739808--3739873	21	3.1	21	84	2	78	27	13	18	40	1.88
3741306--3741358	21	2.8	20	81	18	69	66	1	0	32	1.03
3742457--3742783	109	3.0	109	95	0	591	47	21	4	26	1.69
3743209--3743342	28	4.7	28	85	3	160	31	16	20	32	1.94
3744609--3744634	12	2.2	12	100	0	52	46	7	0	46	1.31
3752852--3752890	20	2.0	19	85	5	51	43	0	2	53	1.14
3753336--3753364	2	14.5	2	100	0	58	51	0	0	48	1.00
3756383--3756426	21	2.1	21	86	0	61	38	22	4	34	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18