genome.fa.s22.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397275.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_34.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2955990

Tables:   1   2   3   4   5   6   7   8   

This is table  1  of  8  ( 891 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2051--2138	39	2.3	39	100	0	176	30	2	21	45	1.64
2873--3745	247	3.5	247	82	5	1035	35	8	5	49	1.57
3610--3914	169	1.8	169	89	2	488	35	7	3	53	1.46
3619--3989	169	2.2	169	80	9	373	35	8	4	52	1.52
3383--4163	418	1.9	422	90	1	1248	34	8	5	51	1.56
3742--5854	250	8.5	250	80	4	1557	32	11	6	46	1.66
3742--5854	252	8.5	247	80	6	1717	32	11	6	46	1.66
3742--5854	495	4.3	497	78	6	1872	32	11	6	46	1.66
6415--6441	7	3.9	7	100	0	54	25	44	0	29	1.54
16289--16314	3	8.7	3	100	0	52	65	0	34	0	0.93
16319--16350	15	2.2	15	94	5	57	12	31	12	43	1.80
29932--29960	2	14.5	2	100	0	58	51	0	0	48	1.00
30954--30978	6	4.2	6	100	0	50	0	68	0	32	0.90
32580--32606	2	13.5	2	100	0	54	48	0	0	51	1.00
36388--36430	21	2.0	21	90	4	68	2	34	0	62	1.08
49822--49861	21	1.9	21	85	10	55	45	27	10	17	1.80
49830--49861	7	4.6	7	96	0	55	43	25	12	18	1.85
57035--57061	14	1.9	14	100	0	54	51	25	0	22	1.48
58305--58340	17	2.1	17	89	0	54	30	22	11	36	1.89
66339--66365	12	2.2	12	100	0	54	25	22	18	33	1.97
68693--68803	56	2.0	56	98	0	213	27	20	19	31	1.97
72151--72225	38	2.0	38	86	5	107	56	5	4	34	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72169--72242	38	1.9	38	83	8	96	55	8	1	35	1.38
78203--79099	76	11.8	76	81	3	808	22	14	26	35	1.93
80449--80666	81	2.7	82	78	4	210	25	30	16	27	1.97
80612--80782	93	1.8	93	81	5	211	28	30	16	25	1.97
80704--80905	81	2.5	81	79	3	219	27	27	19	25	1.99
83257--83390	31	4.5	31	71	16	131	34	20	14	30	1.92
83293--83340	25	1.9	25	91	0	78	29	25	12	33	1.92
83433--83488	24	2.3	24	90	0	94	26	30	16	26	1.96
84140--84207	23	3.0	23	80	8	93	26	35	10	27	1.89
84135--84226	46	2.0	47	82	2	114	27	33	11	27	1.92
84254--84330	23	3.3	23	78	7	75	24	27	15	32	1.95
84153--84432	125	2.2	126	78	7	282	28	30	12	28	1.93
84378--84562	23	8.1	23	73	11	130	23	31	12	31	1.92
89966--90004	17	2.4	17	95	4	71	23	5	15	56	1.59
90239--90337	27	3.7	27	71	2	65	41	12	20	26	1.87
90294--90351	27	2.1	27	90	0	89	37	15	20	25	1.92
90984--91044	29	2.1	29	96	0	113	21	29	18	31	1.96
102106--102163	24	2.5	22	74	17	55	27	3	10	58	1.47
109875--109921	15	3.4	14	80	8	51	55	2	4	38	1.31
109914--109951	12	3.1	12	92	3	58	73	7	0	18	1.06
115028--115080	22	2.4	22	87	0	70	22	11	18	47	1.81
115196--115291	23	4.2	23	85	4	115	32	26	12	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115204--115298	46	2.1	45	88	2	136	31	23	13	31	1.93
115475--115598	61	2.0	60	87	1	176	39	19	8	33	1.81
115973--116005	2	16.5	2	93	0	57	51	0	3	45	1.16
116150--116221	29	2.6	29	79	16	80	38	0	2	58	1.13
116421--116497	29	2.5	31	85	6	104	57	0	1	41	1.07
116494--116527	12	2.9	12	91	4	52	44	0	0	55	0.99
117112--117136	2	12.5	2	100	0	50	48	0	0	52	1.00
128567--128616	23	2.2	23	88	0	73	48	2	0	50	1.12
137579--137656	42	1.9	40	82	7	95	52	2	0	44	1.14
137627--137659	18	1.9	17	88	11	50	48	3	0	48	1.17
149898--149930	15	2.2	15	100	0	66	57	0	42	0	0.98
150495--150550	28	2.0	29	82	3	69	28	1	5	64	1.26
150584--150637	24	2.3	24	84	9	67	57	3	1	37	1.27
150924--151027	53	2.0	53	88	0	154	44	20	7	27	1.79
154225--154287	30	2.1	29	88	2	90	39	3	15	41	1.64
155529--155585	16	3.4	16	82	7	60	38	5	1	54	1.33
155897--155939	21	2.1	20	83	12	52	48	4	4	41	1.44
163782--163813	2	16.0	2	100	0	64	50	0	50	0	1.00
180265--180308	2	22.5	2	95	4	81	50	0	0	50	1.00
197261--197588	160	2.0	164	85	4	441	45	10	15	28	1.79
198410--198745	159	2.1	161	82	7	414	47	9	15	27	1.76
199784--199817	16	2.1	17	88	5	52	52	5	14	26	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200013--200058	19	2.4	19	81	0	65	30	23	4	41	1.74
201985--202026	20	2.1	20	86	0	57	38	2	11	47	1.53
207018--207046	13	2.1	14	93	6	51	27	3	0	68	1.05
225359--225437	32	2.5	32	93	0	131	32	7	15	44	1.74
231223--231340	43	2.7	42	90	2	182	40	14	11	33	1.81
234854--234944	35	2.6	35	96	1	166	17	1	21	59	1.44
242461--242485	12	2.1	12	100	0	50	36	0	0	64	0.94
243209--243799	312	1.9	310	90	1	950	37	24	11	26	1.89
244092--244246	73	2.1	73	84	2	195	22	22	16	38	1.93
244092--244280	73	2.6	74	80	2	177	23	21	16	38	1.93
256390--256414	12	2.1	12	100	0	50	56	8	0	36	1.29
264260--264329	30	2.4	28	79	13	77	35	2	4	57	1.33
264332--264360	11	2.6	11	100	0	58	37	0	0	62	0.96
264490--264567	30	2.7	27	75	9	75	57	0	2	39	1.12
264508--264554	20	2.3	21	81	3	60	68	0	2	29	1.02
271360--271388	15	1.9	15	100	0	58	34	24	27	13	1.93
275983--276017	3	11.7	3	93	0	61	28	0	2	68	1.04
282830--282913	38	2.2	38	85	2	107	45	4	16	33	1.69
295941--296010	36	1.9	36	91	0	113	27	11	45	15	1.80
296529--296577	2	24.5	2	100	0	98	51	0	0	48	1.00
297156--297185	15	2.0	15	93	0	51	0	30	40	30	1.57
297592--297649	28	2.1	28	84	6	75	36	0	0	63	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297600--297668	28	2.5	27	81	13	86	39	0	0	60	0.97
297601--297667	29	2.4	28	81	16	77	40	0	0	59	0.97
299549--299594	22	2.1	22	84	8	58	52	0	4	43	1.21
299609--299643	15	2.4	14	81	9	52	68	0	0	31	0.90
301540--301573	2	17.5	2	93	6	61	0	0	50	50	1.00
320999--321031	15	2.1	17	88	11	52	81	0	9	9	0.87
327400--327468	31	2.2	31	82	5	77	23	5	8	62	1.46
329759--329805	23	2.0	23	84	8	60	65	0	4	29	1.11
331627--331667	12	3.2	12	83	16	55	0	7	41	51	1.30
331630--331671	15	3.0	15	90	10	63	0	7	45	47	1.30
338627--338655	2	14.5	2	100	0	58	0	48	0	51	1.00
340033--340068	18	2.0	18	94	0	63	27	8	19	44	1.79
340610--340656	15	3.1	15	84	0	67	59	0	40	0	0.97
343857--343885	14	2.0	15	93	6	51	58	13	6	20	1.58
343940--343982	21	2.0	21	90	0	68	44	6	2	46	1.43
347138--347195	28	2.0	28	90	6	89	48	0	3	48	1.18
347920--348164	135	1.8	136	88	1	377	34	5	4	55	1.44
352790--352827	18	2.1	18	90	0	58	39	0	2	57	1.12
355538--355568	15	2.1	15	93	0	53	35	0	22	41	1.54
355773--355846	39	1.9	37	89	10	114	24	0	1	74	0.90
359104--359142	16	2.6	16	88	8	55	41	0	10	48	1.37
380439--380465	3	9.0	3	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386841--386878	19	2.0	19	85	10	51	23	7	2	65	1.32
392872--392905	14	2.4	14	90	5	50	38	0	14	47	1.45
395285--395331	24	1.9	25	83	12	62	42	12	2	42	1.55
401507--401560	27	2.0	28	88	3	83	62	12	1	22	1.39
406332--406396	33	1.9	34	84	9	89	21	12	18	47	1.81
427581--427612	15	2.1	15	94	0	55	59	3	0	37	1.13
431922--431987	20	3.5	20	68	19	61	65	1	0	33	1.02
431922--431996	35	2.2	35	88	11	111	65	1	0	33	1.01
432231--432263	15	2.3	15	94	5	59	57	6	3	33	1.38
436429--436475	18	2.8	17	78	9	51	80	8	8	2	0.97

Tables:   1   2   3   4   5   6   7   8