genome.fa.s22.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397275.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_34.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2955990

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 891 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2309841--2310292	126	3.6	127	81	3	478	42	10	11	36	1.75
2310231--2310326	29	3.4	29	76	11	108	38	10	13	37	1.79
2328670--2328711	23	2.0	20	86	13	57	57	30	0	11	1.35
2329138--2329163	2	13.0	2	100	0	52	50	0	0	50	1.00
2337118--2337152	8	3.9	9	85	14	54	80	0	0	20	0.72
2337118--2337151	18	1.9	18	94	5	61	79	0	0	20	0.73
2341697--2341734	17	2.2	17	86	9	51	73	5	2	18	1.14
2346541--2346652	49	2.3	48	79	10	122	51	8	5	34	1.54
2347847--2347888	13	3.2	13	80	12	50	11	7	2	78	1.04
2347841--2347873	17	1.9	17	88	11	50	12	9	0	78	0.95
2347829--2347874	12	3.8	12	78	16	51	10	10	0	78	0.97
2350539--2350580	19	2.2	19	86	0	57	38	11	11	38	1.79
2351679--2351739	29	2.1	29	93	0	104	29	9	13	47	1.74
2353876--2353931	21	2.7	21	91	0	94	42	12	17	26	1.85
2354341--2354465	35	3.7	35	73	10	132	26	8	26	39	1.84
2354336--2354436	32	3.1	32	72	13	105	24	7	23	43	1.80
2354336--2354465	67	1.9	67	90	3	208	25	7	26	40	1.82
2366886--2366931	24	1.9	24	100	0	92	63	10	17	8	1.51
2382169--2382252	36	2.3	36	79	0	96	29	27	16	26	1.97
2390980--2391045	28	2.4	27	84	5	78	40	21	13	24	1.89
2403324--2403397	36	2.1	36	92	0	121	35	10	14	39	1.82
2405159--2405215	27	2.2	26	81	6	62	42	3	3	50	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2405360--2405412	26	2.0	28	92	7	92	39	1	1	56	1.21
2415069--2415125	21	2.7	21	97	0	105	42	15	14	28	1.86
2419286--2419402	60	2.0	60	83	6	148	24	17	33	23	1.97
2423091--2423157	29	2.2	29	86	7	89	82	0	14	2	0.79
2423092--2423162	17	4.1	16	78	12	70	81	0	15	2	0.80
2438400--2438437	18	2.2	17	95	4	67	26	21	21	31	1.98
2440310--2440472	76	2.1	77	89	1	247	39	9	11	38	1.75
2443621--2443656	5	7.8	5	93	6	51	80	0	0	19	0.71
2456037--2456103	34	2.0	34	91	5	109	25	13	29	31	1.94
2461018--2461063	12	4.1	12	76	23	55	73	0	0	26	0.83
2461020--2461063	15	2.7	16	82	10	54	75	0	0	25	0.81
2467990--2468163	94	1.8	94	85	1	231	33	10	4	51	1.58
2470333--2470396	5	11.8	5	77	12	56	75	1	4	18	1.06
2470349--2470396	17	2.8	16	79	14	60	77	0	4	18	0.93
2470350--2470387	6	6.5	6	81	6	51	81	0	2	15	0.80
2486647--2486859	27	7.9	27	80	3	214	41	14	15	27	1.87
2496716--2496920	112	1.8	112	84	9	285	39	10	14	36	1.81
2497656--2497726	29	2.4	29	90	4	106	25	11	18	45	1.82
2500751--2500827	34	2.2	35	86	2	102	35	10	12	41	1.78
2501041--2501107	15	4.4	15	86	1	80	35	10	22	31	1.88
2501245--2501432	56	3.3	59	75	16	205	36	2	0	60	1.13
2501310--2501451	21	6.4	21	67	23	58	33	2	0	63	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2501323--2501482	15	9.9	15	70	18	92	33	1	0	65	1.06
2501331--2501394	22	2.9	23	82	17	82	32	0	0	67	0.91
2501337--2501405	21	3.1	24	74	21	78	34	0	0	65	0.93
2501310--2501482	27	6.2	26	73	18	136	32	1	0	64	1.08
2501254--2501482	113	2.0	114	94	4	401	33	2	0	63	1.10
2501323--2501479	9	18.2	9	63	26	56	33	1	0	64	1.06
2501436--2501521	33	2.6	33	83	5	102	29	2	0	68	1.02
2501303--2501478	60	3.0	60	72	17	192	34	1	0	63	1.09
2501498--2501612	31	4.0	30	71	20	95	29	1	0	67	1.06
2501491--2501608	55	2.2	55	81	16	151	30	1	0	66	1.07
2509194--2509400	110	1.9	110	91	2	344	23	8	14	53	1.68
2511468--2511509	13	3.2	13	82	0	57	40	16	11	30	1.85
2513419--2513457	19	2.0	20	85	14	55	51	5	0	43	1.24
2520117--2520216	29	3.5	28	80	5	110	53	9	21	17	1.71
2520978--2521019	17	2.6	17	85	14	54	50	7	4	38	1.51
2527668--2527734	12	5.6	12	70	19	50	52	0	0	47	1.00
2527687--2527743	15	3.9	15	74	4	53	47	0	0	52	1.00
2527677--2527756	37	2.2	37	86	2	117	50	0	0	50	1.00
2550862--2550978	44	2.7	43	76	11	121	31	10	5	52	1.57
2554129--2554183	25	2.2	25	90	0	83	32	14	25	27	1.95
2555526--2555572	19	2.5	19	89	6	69	4	8	12	74	1.19
2562561--2562632	25	2.9	25	100	0	144	45	19	16	18	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2563844--2563887	21	2.0	22	91	4	72	31	0	6	61	1.22
2567699--2567739	20	2.0	20	95	0	73	31	4	17	46	1.69
2567702--2567748	20	2.3	20	88	0	67	36	4	10	48	1.57
2577550--2577574	11	2.3	11	100	0	50	72	0	0	28	0.86
2577669--2577707	19	2.1	19	90	0	60	58	0	2	38	1.12
2580098--2580153	25	2.2	25	83	0	76	26	17	28	26	1.98
2596373--2596403	16	1.9	16	93	0	53	41	3	6	48	1.45
2601044--2601069	11	2.4	11	100	0	52	23	7	34	34	1.83
2608547--2608603	23	2.6	22	86	5	71	0	36	0	63	0.95
2612658--2613049	180	2.2	180	84	3	504	37	15	13	34	1.86
2623387--2623634	122	2.0	122	95	1	444	35	17	21	25	1.95
2634175--2634208	18	1.9	18	88	5	52	35	11	14	38	1.83
2634566--2634964	204	2.0	204	85	2	550	28	14	17	38	1.90
2655850--2655904	8	7.0	8	79	8	60	65	0	34	0	0.93
2655860--2655904	15	3.0	14	84	15	63	66	0	33	0	0.92
2655851--2655907	15	3.6	16	73	19	57	66	0	33	0	0.92
2656435--2656478	21	2.0	22	86	4	63	29	0	9	61	1.27
2664562--2664605	21	2.0	22	91	4	72	29	0	11	59	1.32
2666992--2667016	3	8.3	3	100	0	50	32	0	0	68	0.90
2669412--2669458	23	2.0	25	83	8	62	23	17	0	59	1.37
2676259--2676974	45	16.0	45	69	12	278	28	17	14	39	1.89
2676233--2676444	90	2.3	89	80	5	212	26	15	13	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2676734--2676800	22	3.2	21	74	17	68	29	20	10	38	1.86
2676859--2676951	46	2.0	46	83	4	116	30	23	10	35	1.89
2676861--2676965	46	2.3	46	80	6	115	29	23	10	36	1.88
2677991--2678042	26	2.0	26	100	0	104	26	19	23	30	1.98
2678488--2678537	20	2.5	20	86	0	73	16	8	6	70	1.32
2678637--2678684	23	2.1	23	100	0	96	20	4	27	47	1.68
2683278--2683337	23	2.6	23	92	5	95	38	0	23	38	1.55
2689637--2689702	21	3.1	21	79	14	73	0	33	0	66	0.92
2689637--2689705	4	17.5	4	75	11	54	0	33	0	66	0.92
2689662--2689725	13	4.7	13	79	11	58	0	34	0	65	0.93
2689667--2689725	17	3.3	17	79	15	57	0	33	0	66	0.92
2690462--2690509	18	2.6	19	80	3	53	39	4	2	54	1.32
2698129--2698181	21	2.3	23	90	9	83	0	41	0	58	0.98
2698133--2698178	10	4.4	11	76	17	53	0	43	0	56	0.99
2698911--2698959	18	2.6	19	83	3	64	36	8	0	55	1.30
2701227--2701274	19	2.5	20	80	13	55	52	4	20	22	1.64
2701605--2701648	21	2.1	21	87	4	63	31	4	20	43	1.72
2703157--2703489	35	9.4	35	77	1	270	43	13	6	33	1.70
2703157--2703490	71	4.7	70	77	2	310	43	13	6	33	1.71
2703138--2703490	106	3.3	104	77	2	294	42	13	6	33	1.71
2705379--2705406	14	2.0	14	100	0	56	28	21	7	42	1.79
2710618--2710839	35	6.3	35	78	4	196	42	12	9	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2710646--2710839	35	5.5	36	81	2	205	43	12	8	34	1.74
2732511--2732554	21	2.0	22	91	4	72	61	6	0	31	1.22
2739481--2739623	29	5.0	28	84	6	169	40	10	13	35	1.79
2739481--2739640	59	2.8	58	82	4	189	40	10	12	36	1.78
2758386--2758430	20	2.2	20	88	0	63	26	0	8	64	1.23
2758398--2758443	20	2.2	20	88	3	65	23	2	2	71	1.08
2761174--2761209	16	2.3	16	95	4	65	22	0	11	66	1.22
2762129--2762161	10	3.4	10	91	8	50	66	3	3	27	1.21
2764108--2764299	68	2.8	68	72	7	174	38	9	16	36	1.81
2776261--2776285	11	2.3	11	100	0	50	40	8	16	36	1.77

Tables:   1   2   3   4   5   6   7   8