genome.fa.s22.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397275.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_34.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2955990

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 891 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1678782--1678837	28	2.0	28	82	6	69	35	3	0	60	1.14
1689340--1689382	19	2.2	19	83	8	50	48	2	0	48	1.14
1694471--1694509	3	13.0	3	100	0	78	33	0	0	66	0.92
1701712--1701909	74	2.7	73	82	3	234	22	15	16	45	1.85
1703015--1703047	17	1.9	17	88	11	50	42	9	3	45	1.51
1706649--1706694	2	22.5	2	95	4	83	47	0	2	50	1.13
1712384--1712411	3	9.3	3	100	0	56	67	0	0	32	0.91
1714372--1714482	58	1.9	58	85	7	154	39	9	8	42	1.68
1719158--1719218	12	4.9	13	88	11	85	0	40	16	42	1.48
1719158--1719218	25	2.5	24	97	2	113	0	40	16	42	1.48
1720378--1720407	3	10.0	3	100	0	60	66	0	0	33	0.92
1728602--1728712	33	3.2	32	66	23	82	27	6	24	42	1.78
1728611--1728721	37	3.1	36	67	19	97	28	6	25	39	1.80
1729713--1729752	20	2.0	20	90	9	64	5	17	0	77	0.94
1735844--1735975	22	6.1	22	71	3	97	24	9	21	43	1.83
1735859--1735971	43	2.6	43	87	0	154	25	11	21	41	1.86
1735868--1735949	21	3.9	21	67	3	56	25	12	20	41	1.87
1736054--1736112	22	2.8	21	82	5	73	49	23	6	20	1.73
1737566--1737609	21	2.0	22	91	4	72	31	0	9	59	1.29
1755873--1755926	15	3.6	15	94	0	90	37	5	22	35	1.77
1756111--1756222	37	2.9	38	88	5	163	30	1	0	66	1.07
1756136--1756311	15	10.8	16	64	26	50	30	2	0	67	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1756138--1756203	21	3.4	19	71	24	66	27	1	0	71	0.95
1756230--1756285	23	2.4	23	85	5	69	37	1	0	60	1.07
1756253--1756286	5	7.2	5	87	12	54	35	0	0	64	0.94
1756269--1756314	15	3.1	16	84	12	62	32	0	0	67	0.91
1758831--1758870	19	2.2	19	86	4	55	27	2	50	20	1.61
1772271--1772363	29	3.1	29	79	13	107	66	3	24	5	1.28
1772558--1772607	19	2.6	20	78	9	59	54	6	4	36	1.44
1780676--1780700	3	8.3	3	100	0	50	32	0	32	36	1.58
1783474--1783509	18	2.1	18	90	10	58	44	22	2	30	1.67
1790663--1790810	69	2.2	69	85	3	192	29	10	25	35	1.89
1791158--1791182	2	12.5	2	100	0	50	52	0	0	48	1.00
1791664--1791707	21	2.0	22	86	4	63	29	0	6	63	1.20
1793420--1793538	27	4.4	27	71	12	82	30	21	11	36	1.89
1793421--1793538	55	2.2	54	86	4	157	30	21	11	36	1.89
1800760--1800821	21	2.8	22	78	11	72	32	9	19	38	1.84
1800929--1800977	20	2.3	21	75	10	55	40	10	16	32	1.82
1802518--1802584	33	2.0	32	85	5	89	34	10	20	34	1.87
1816829--1817177	179	1.9	179	91	2	576	44	16	9	29	1.79
1827490--1827664	76	2.3	76	88	1	262	39	6	13	40	1.72
1841250--1841293	17	2.6	17	92	3	72	38	11	11	38	1.77
1843834--1843873	6	6.8	6	88	5	64	32	0	2	65	1.06
1845588--1845636	20	2.5	20	100	0	98	44	14	10	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1853772--1853813	14	3.0	14	76	13	50	66	0	33	0	0.92
1855297--1855359	25	2.5	25	87	5	83	25	11	33	30	1.90
1858546--1858640	35	2.7	35	80	4	104	38	4	10	46	1.58
1861493--1861544	22	2.4	22	90	0	77	40	0	3	55	1.18
1869596--1869641	21	2.2	21	84	0	56	28	4	19	47	1.68
1869743--1869783	21	1.9	22	90	5	66	24	0	17	58	1.38
1869744--1869811	31	2.2	31	86	0	100	25	1	20	52	1.54
1869878--1869941	21	3.1	21	68	2	58	37	15	23	23	1.93
1870500--1870596	29	3.3	29	72	11	99	26	13	23	36	1.92
1870476--1870597	58	2.1	58	84	1	165	27	11	24	36	1.90
1873053--1873122	21	3.3	21	66	15	63	48	5	2	42	1.41
1881880--1881962	35	2.3	35	81	6	96	51	14	2	31	1.55
1881903--1882099	71	2.8	70	71	12	174	45	13	6	35	1.68
1881971--1882052	35	2.3	35	97	0	155	40	9	8	41	1.69
1881868--1882072	106	1.9	105	80	4	234	43	13	6	36	1.70
1881903--1882089	35	5.4	35	79	6	150	45	13	6	34	1.69
1883885--1883925	20	2.0	20	90	0	64	65	14	4	14	1.42
1885328--1885402	36	2.1	36	94	0	132	25	26	32	16	1.96
1885334--1885410	36	2.1	36	90	0	118	27	27	31	14	1.95
1890983--1891099	60	2.0	60	92	0	198	27	28	11	33	1.91
1898392--1898435	21	2.0	22	86	4	63	61	9	0	29	1.27
1909592--1909634	4	10.8	4	89	0	59	51	23	0	25	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1910509--1910549	20	2.0	21	85	4	57	26	14	14	43	1.84
1912677--1912854	42	4.3	42	79	5	164	23	14	20	42	1.89
1912733--1912850	40	2.9	41	82	2	139	24	15	20	39	1.91
1916178--1916263	36	2.4	36	90	0	127	30	16	33	19	1.94
1918529--1918560	8	4.0	8	91	0	55	59	0	40	0	0.97
1938747--1938954	93	2.3	92	80	5	251	37	18	11	32	1.86
1943790--1943839	14	3.4	14	78	8	55	68	0	32	0	0.90
1943783--1943840	26	2.1	29	84	9	77	67	0	32	0	0.91
1956331--1956437	56	1.9	56	86	3	153	48	16	7	27	1.73
1973180--1973261	36	2.3	36	85	4	103	30	19	24	25	1.98
1976783--1977015	68	3.4	67	76	10	186	34	18	9	36	1.84
1981991--1982032	8	5.0	8	85	8	57	11	0	0	88	0.53
1981991--1982028	13	2.9	13	92	0	67	10	0	0	89	0.49
1981991--1982026	18	1.9	19	94	5	65	11	0	0	88	0.50
1981991--1982032	17	2.5	16	88	7	57	11	0	0	88	0.53
1996816--1996859	15	2.9	15	79	0	52	31	13	25	29	1.94
1997075--1997162	33	2.6	33	85	3	104	29	3	0	67	1.07
1997114--1997268	50	3.0	50	72	4	123	28	2	1	67	1.11
1997176--1997224	25	2.0	25	84	4	64	30	0	0	69	0.89
1997143--1997208	35	1.9	32	82	17	80	33	3	0	63	1.10
1997224--1997267	15	2.9	15	86	6	54	27	2	4	65	1.23
1997224--1997257	14	2.4	14	90	9	52	26	2	5	64	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1997143--1997265	52	2.3	54	80	12	128	29	2	1	66	1.14
2004069--2004123	25	2.2	25	83	0	74	29	30	12	27	1.93
2005650--2005683	11	3.2	11	95	4	61	0	23	0	76	0.79
2005649--2005683	17	2.1	16	89	5	52	0	22	0	77	0.78
2011041--2011093	26	2.0	26	96	0	97	35	20	9	33	1.85
2022036--2022069	2	18.0	2	88	11	54	52	0	0	47	1.00
2024554--2024593	19	2.1	19	100	0	80	40	10	17	32	1.83
2026799--2026838	19	2.2	18	86	4	53	42	2	5	50	1.37
2027537--2027589	28	1.9	27	84	3	70	37	18	3	39	1.69
2032706--2032748	12	3.8	11	80	14	52	51	2	2	44	1.27
2032936--2033053	57	2.0	59	85	9	163	29	19	16	34	1.93
2036410--2036487	37	2.1	37	95	0	138	48	15	12	23	1.79
2037652--2037692	3	13.7	3	89	0	64	63	0	0	36	0.95
2040024--2040126	54	1.9	54	81	0	125	30	21	19	29	1.97
2043720--2043761	14	2.9	14	80	16	50	78	2	2	16	0.96
2043850--2043875	6	4.3	6	100	0	52	0	15	0	84	0.62
2045316--2045354	20	1.9	20	84	5	51	53	2	7	35	1.43
2045589--2045686	51	1.9	51	81	4	117	45	13	11	29	1.78
2046593--2046647	28	2.0	28	85	0	74	29	1	7	61	1.33
2052896--2052936	2	20.5	2	94	0	73	51	0	0	48	1.00
2053465--2053497	6	5.3	6	96	3	57	81	0	0	18	0.68
2059421--2059463	2	21.5	2	90	0	68	46	0	4	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2059677--2059808	50	2.6	50	77	3	140	36	7	15	40	1.76
2059940--2059988	22	2.2	23	78	10	57	22	6	20	51	1.69
2059953--2059998	22	2.1	22	87	0	65	21	6	21	50	1.71
2062556--2062622	15	4.4	15	88	1	89	35	8	22	32	1.85
2062908--2063074	49	3.1	49	67	23	138	33	3	1	61	1.21
2062955--2063139	22	8.4	23	73	20	121	32	1	0	64	1.07
2063063--2063140	23	3.5	22	74	13	70	32	0	0	67	0.90
2063110--2063256	68	2.2	68	83	4	181	32	2	0	65	1.04
2062779--2063245	17	29.5	16	65	20	116	33	2	0	63	1.11
2062948--2063239	27	10.3	29	67	20	104	33	2	0	64	1.08

Tables:   1   2   3   4   5   6   7   8