genome.fa.s22.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397275.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_34.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2955990

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 891 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2776463--2776629	68	2.5	68	79	0	181	36	8	17	37	1.81
2784437--2784467	15	2.1	15	93	0	53	32	0	9	58	1.31
2799236--2799309	35	2.1	35	87	0	103	25	13	28	32	1.94
2812547--2812634	32	2.8	32	94	0	149	34	13	28	23	1.93
2814716--2814900	73	2.5	73	84	4	239	27	21	14	36	1.92
2819698--2819966	36	7.5	35	74	5	178	32	10	14	39	1.79
2819905--2819986	35	2.3	35	87	2	110	39	6	15	39	1.73
2825901--2826082	68	2.7	68	80	1	213	34	17	11	36	1.86
2827771--2827828	29	2.0	28	86	3	80	27	51	0	20	1.47
2839326--2839364	8	4.9	8	80	0	51	48	10	2	38	1.51
2839394--2839484	16	5.7	16	70	10	69	42	5	12	39	1.65
2839422--2839484	22	2.8	21	78	21	74	46	6	7	39	1.59
2844029--2844084	25	2.2	25	83	0	76	23	23	17	35	1.95
2846241--2846277	11	3.4	11	88	0	56	43	0	0	56	0.99
2846394--2846421	11	2.5	11	100	0	56	28	0	0	71	0.86
2853319--2855012	231	7.3	232	79	6	1564	38	13	10	37	1.80
2856201--2856364	42	3.9	42	82	2	204	37	21	17	23	1.93
2863949--2864005	29	2.0	29	83	13	73	54	24	5	15	1.62
2864181--2864259	41	1.9	41	94	0	140	35	22	17	24	1.95
2873574--2873729	40	3.8	40	74	9	145	58	19	1	19	1.48
2873531--2873732	80	2.5	82	78	10	191	57	18	2	20	1.51
2873608--2873733	41	3.0	42	80	5	139	60	20	2	16	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2880252--2880293	21	2.0	21	86	4	59	45	9	2	42	1.49
2885073--2885209	35	3.9	35	78	1	148	40	12	7	39	1.71
2885087--2885209	35	3.5	35	81	1	156	42	13	7	37	1.71
2885067--2885207	71	2.0	71	91	2	230	41	13	6	39	1.70
2887965--2888049	29	2.9	29	96	1	152	44	0	24	30	1.54
2891818--2894845	231	13.0	231	76	7	2514	37	13	11	37	1.80
2891818--2894845	465	6.5	461	76	8	2443	37	13	11	37	1.80
2891818--2894858	475	6.5	462	76	6	2515	37	13	10	37	1.80
2894914--2896168	231	5.4	230	80	5	1327	37	12	11	37	1.80
2894962--2896152	461	2.6	460	82	5	1368	38	12	11	37	1.80
2897645--2898152	243	2.1	242	79	5	528	37	12	10	39	1.77
2896621--2898838	231	9.7	231	74	9	1540	37	12	11	38	1.79
2897201--2898786	232	6.9	231	75	8	1153	37	13	10	38	1.79
2898589--2898631	18	2.4	17	81	11	50	46	6	4	41	1.51
2898362--2898786	221	1.9	220	84	2	566	39	13	8	38	1.76
2915171--2915244	36	2.1	36	87	5	105	29	28	18	22	1.98
2915193--2915270	36	2.2	37	79	6	88	33	28	17	20	1.96
2916696--2916864	70	2.4	70	80	6	173	29	18	17	34	1.94
2923822--2923948	67	1.9	67	81	3	157	25	14	27	33	1.94
2934347--2935371	171	6.0	170	74	6	653	38	10	13	35	1.80
2934688--2935326	342	1.9	342	80	5	754	38	10	14	35	1.81
2935548--2937762	171	13.1	170	72	6	801	37	11	13	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2940436--2940488	22	2.4	22	90	0	88	20	41	24	13	1.88
2949121--2950156	171	6.1	170	73	7	654	34	13	11	38	1.81
2951785--2953224	171	8.4	171	71	8	663	34	13	10	37	1.79
2953383--2954823	170	8.4	170	75	6	994	34	13	12	36	1.83
2953384--2954822	343	4.2	340	75	7	1061	34	13	12	36	1.82
2954836--2955990	341	3.4	340	76	7	890	35	13	12	36	1.82
2954834--2955990	170	6.8	171	78	3	958	35	13	12	36	1.82

Tables:   1   2   3   4   5   6   7   8

The End!