genome.fa.s22.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397275.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_34.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2955990

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 891 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438573--438645	17	4.4	17	72	10	53	47	4	4	43	1.41
439453--439499	24	2.0	24	83	8	60	36	6	2	55	1.37
450262--450296	9	3.9	9	88	0	52	54	20	0	25	1.45
465053--465160	53	2.0	54	83	5	139	35	16	13	34	1.89
465086--465257	89	1.9	89	84	4	231	34	18	13	33	1.90
466314--466452	69	2.0	69	98	0	269	46	17	8	28	1.77
471248--471318	30	2.4	31	85	4	92	39	5	1	53	1.33
488967--488996	7	4.3	7	95	0	51	30	0	0	70	0.88
489822--489851	15	1.9	16	93	6	53	83	0	0	16	0.65
490161--490210	26	1.9	26	84	8	66	44	8	0	48	1.32
490012--490507	154	3.2	152	86	7	653	40	4	3	52	1.36
490012--490588	311	1.9	310	80	8	674	41	4	3	51	1.37
490658--490699	16	2.6	16	81	11	50	47	0	0	52	1.00
490671--490714	22	2.0	23	86	4	63	43	0	0	56	0.99
491403--491454	26	2.0	25	85	3	68	53	3	3	38	1.37
497131--497177	23	2.0	23	87	0	67	61	6	10	21	1.50
497918--497992	22	3.4	22	73	15	64	50	1	6	41	1.37
498344--498389	24	2.0	22	83	12	56	78	8	4	8	1.09
498429--498485	19	3.1	18	70	7	51	57	12	5	24	1.55
499680--499721	15	2.7	15	79	17	50	50	4	0	45	1.23
499326--500376	331	3.1	330	78	10	977	41	7	6	44	1.59
503513--503736	115	1.9	115	82	1	279	56	10	20	12	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508148--508191	20	2.2	20	88	8	63	56	6	0	36	1.26
511625--511685	20	3.1	19	76	4	59	49	0	4	45	1.23
519828--519873	18	2.5	19	79	13	51	41	2	2	54	1.25
520153--520192	16	2.4	18	84	16	59	60	0	0	40	0.97
520194--520276	24	3.5	24	94	0	148	61	0	0	38	0.96
539702--539806	39	2.7	39	93	0	174	50	17	24	7	1.72
540258--540392	67	2.0	67	98	0	261	22	52	2	22	1.60
552782--552835	19	2.7	19	77	8	54	53	0	0	46	1.00
555168--555256	44	2.0	43	89	6	135	19	15	52	12	1.74
555200--555306	50	2.1	52	86	5	148	17	15	57	9	1.65
555253--555339	43	2.0	43	88	0	129	19	12	55	12	1.69
567801--567825	13	1.9	13	100	0	50	56	8	4	32	1.47
569259--569439	38	4.8	38	78	6	127	33	17	19	30	1.94
574220--574267	25	1.9	25	95	0	87	39	4	12	43	1.62
574221--574273	25	2.2	25	89	3	81	39	3	15	41	1.65
574566--574625	16	3.8	16	73	8	59	70	1	6	21	1.20
575219--575369	59	2.7	56	80	11	141	51	1	1	45	1.17
578899--578950	26	2.0	25	96	3	95	38	25	11	25	1.89
586959--586987	12	2.3	13	94	5	51	31	0	24	44	1.54
589464--589510	23	2.0	23	91	0	76	82	0	17	0	0.66
591429--591504	4	18.8	4	71	12	57	47	1	2	48	1.24
604235--604264	2	15.5	2	93	6	53	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
608393--608424	3	10.7	3	100	0	64	34	0	0	65	0.93
611926--611976	26	2.0	26	85	14	70	45	1	0	52	1.12
612606--612702	43	2.2	44	85	1	124	36	4	7	52	1.48
612628--612695	20	3.1	22	69	12	59	38	2	7	51	1.45
612696--612739	18	2.4	18	85	11	63	34	0	0	65	0.93
615735--615777	17	2.5	18	85	7	54	37	4	2	55	1.33
623987--624026	21	1.9	21	94	0	71	42	20	17	20	1.89
626695--626737	18	2.4	18	81	14	61	27	11	4	55	1.55
634569--634764	73	2.7	72	80	4	189	21	19	18	40	1.91
648592--648626	3	11.7	3	100	0	70	68	0	0	31	0.90
648897--648956	29	2.1	29	84	3	77	46	13	6	33	1.69
649256--649280	13	1.9	13	100	0	50	68	0	0	32	0.90
653734--653930	104	1.8	104	80	7	234	43	5	16	35	1.70
657306--657356	4	12.8	4	75	8	50	68	1	29	0	1.00
658191--658215	2	12.5	2	100	0	50	52	48	0	0	1.00
671416--672008	307	1.9	307	81	2	717	28	16	24	29	1.97
673203--673334	49	2.7	50	83	3	169	26	10	25	37	1.88
687665--687695	13	2.4	13	100	0	62	29	16	19	35	1.93
693886--693919	16	2.1	16	88	0	50	32	0	26	41	1.56
694851--694895	20	2.2	20	84	0	54	35	2	11	51	1.50
697792--697951	81	2.0	80	92	3	268	23	15	10	51	1.73
698033--698062	2	15.5	2	93	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700386--700423	17	2.2	18	90	4	60	39	5	31	23	1.77
709968--710067	36	2.8	36	76	3	103	32	15	22	31	1.94
713470--713534	21	3.0	21	93	2	103	63	6	0	30	1.19
717153--717182	11	2.9	10	90	9	51	33	10	10	46	1.71
720917--720949	17	1.9	17	88	11	50	42	6	24	27	1.78
723427--723541	28	4.0	28	80	6	88	37	9	7	45	1.66
723459--723576	59	2.0	57	83	3	146	37	10	7	44	1.67
723439--723576	29	4.8	28	79	7	114	37	10	8	43	1.69
724297--724381	27	3.2	27	63	21	70	43	14	10	31	1.79
724286--724391	53	2.0	53	100	0	212	39	13	11	35	1.80
726491--726684	100	1.9	99	81	5	230	42	9	12	35	1.76
727128--727174	2	23.5	2	95	0	85	2	0	48	48	1.13
733068--733142	31	2.4	31	86	4	98	56	9	10	24	1.63
734373--734472	31	3.2	30	79	12	87	28	13	6	53	1.63
753594--753649	21	2.7	21	77	0	67	21	16	21	41	1.90
753598--753655	21	2.8	21	75	0	62	24	15	20	39	1.91
757899--757948	23	2.2	23	92	0	82	24	14	24	38	1.92
757856--758060	110	1.9	110	89	0	320	23	12	28	35	1.91
758023--758085	23	2.7	23	85	0	81	23	9	26	39	1.86
759548--759575	5	5.6	5	100	0	56	17	0	0	82	0.68
762117--762156	20	2.0	20	85	0	53	32	25	10	32	1.89
762491--762541	25	2.1	24	88	3	75	39	23	9	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
762584--762616	15	2.3	15	89	5	50	42	6	21	30	1.77
762515--762723	99	2.1	101	79	8	221	35	15	17	31	1.91
768143--768171	14	2.1	14	93	6	51	51	20	6	20	1.70
770957--770983	13	2.1	13	100	0	54	25	29	0	44	1.54
773365--773451	41	2.1	40	89	8	131	25	20	12	41	1.88
776824--776858	12	2.9	12	95	0	61	25	5	0	68	1.11
776888--776966	31	2.5	31	81	0	86	55	11	11	21	1.66
778932--778959	3	9.3	3	100	0	56	67	0	0	32	0.91
784905--784938	15	2.3	15	89	0	50	70	5	23	0	1.09
789578--789639	32	1.9	32	93	0	106	35	19	22	22	1.96
790488--790539	19	2.5	20	82	14	70	50	1	0	48	1.12
790489--790531	20	2.2	20	91	4	70	48	0	0	51	1.00
790611--790654	17	2.6	17	82	10	56	59	2	0	38	1.10
798397--798436	21	1.9	21	90	10	64	45	5	2	47	1.38
800962--801269	170	1.8	170	92	1	519	33	24	14	27	1.95
803806--803838	2	17.0	2	93	6	59	48	0	0	51	1.00
805260--805298	3	13.0	3	83	0	51	61	5	0	33	1.18
822133--822371	128	1.8	134	82	13	318	45	3	7	43	1.49
822262--822308	17	2.7	18	77	9	53	46	0	6	46	1.28
822467--822508	23	1.9	22	85	9	59	47	2	4	45	1.36
827642--827811	84	2.0	84	81	5	200	55	14	7	22	1.63
831438--831463	11	2.4	11	100	0	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
831570--831611	17	2.4	18	80	11	52	47	0	4	47	1.23
831907--831947	20	2.0	20	86	9	57	46	9	0	43	1.36
838506--838581	37	2.1	36	87	2	107	44	9	5	40	1.59
838988--839153	81	2.1	81	82	5	203	22	9	12	55	1.65
844003--844051	22	2.2	22	78	7	55	48	0	8	42	1.32
848555--848682	63	2.0	63	98	0	247	33	10	20	35	1.88
849693--849862	83	2.1	82	84	3	216	22	8	12	55	1.65
850627--850669	20	2.0	22	86	8	63	41	0	2	55	1.12
850649--850712	15	4.3	15	78	11	62	45	0	7	46	1.32
850665--850732	30	2.2	31	81	5	84	45	1	11	41	1.50

Tables:   1   2   3   4   5   6   7   8