genome.fa.s27.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397280.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_77.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1703557

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417641--418434	395	2.0	396	86	0	1104	32	19	13	33	1.91
429388--429432	20	2.2	21	84	4	56	28	22	6	42	1.79
440052--440096	18	2.5	18	92	7	74	53	24	0	22	1.46
451002--451130	56	2.3	56	80	5	127	23	26	8	41	1.83
480465--480497	18	1.9	17	88	11	50	57	6	3	33	1.38
480471--480504	18	1.9	18	88	5	52	58	8	2	29	1.43
507896--508109	28	7.5	28	77	7	207	41	10	13	35	1.79
507932--508092	55	2.8	58	83	4	202	42	9	14	33	1.77
514895--515133	29	8.3	29	78	7	263	36	10	15	37	1.82
514895--515129	57	4.1	56	78	12	208	36	11	15	37	1.83
514895--515133	86	2.8	86	83	7	290	36	10	15	37	1.82
529726--529990	28	9.4	28	76	10	243	38	10	14	35	1.81
529818--529937	55	2.1	57	87	6	174	42	10	11	35	1.76
530195--530320	63	2.0	63	85	3	173	40	23	20	15	1.91
532415--532455	11	3.6	11	90	3	55	0	29	2	68	1.03
538655--538785	65	2.0	65	85	2	174	27	12	22	37	1.91
546915--547205	29	10.0	29	78	5	239	36	12	10	40	1.77
549162--549201	16	2.5	16	95	0	71	22	20	7	50	1.73
575189--575231	3	14.3	3	100	0	86	67	0	0	32	0.91
575464--575511	23	2.0	23	84	11	62	60	2	2	35	1.20
575464--575509	24	1.9	24	86	0	65	63	2	2	32	1.19
577185--577461	28	9.6	28	81	6	295	38	12	10	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577210--577454	86	2.9	87	82	7	304	38	13	9	38	1.77
577185--577454	57	4.7	56	79	6	267	39	12	10	37	1.78
579847--579894	24	2.0	24	84	8	62	60	0	39	0	0.97
580169--580214	22	2.0	22	84	12	58	34	4	32	28	1.77
582317--582449	67	2.0	67	89	2	205	36	26	9	27	1.88
605451--605635	35	5.3	35	86	3	259	46	14	6	32	1.70
605460--605517	18	3.3	18	68	22	59	44	15	6	32	1.73
605451--605635	71	2.7	70	85	5	250	46	14	6	32	1.70
611602--611765	77	2.1	77	86	0	220	37	10	13	37	1.80
612066--612105	7	5.6	7	84	3	53	15	0	37	47	1.45
622299--622353	19	2.9	19	75	8	58	58	1	3	36	1.26
622329--622371	16	2.6	17	79	17	54	51	0	0	48	1.00
630250--630322	33	2.2	33	82	4	85	39	13	6	39	1.72
630373--630509	30	4.7	30	81	5	115	51	2	5	40	1.39
630396--630504	27	3.9	28	80	6	123	55	2	4	36	1.35
637541--637570	14	2.1	14	93	0	51	56	0	0	43	0.99
637551--637580	11	2.7	11	89	0	51	56	0	0	43	0.99
638672--638718	15	3.0	15	87	6	58	63	2	34	0	1.06
638678--638725	23	2.1	22	88	3	69	70	0	29	0	0.87
638682--638726	15	3.1	15	87	3	65	71	0	28	0	0.87
639526--639556	2	15.5	2	93	0	53	51	3	0	45	1.17
642159--642233	20	3.8	20	100	0	150	40	10	10	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642751--642783	10	3.4	10	83	8	50	39	3	9	48	1.50
643461--643632	73	2.4	73	81	2	211	14	19	23	41	1.89
643502--643615	37	3.1	37	69	5	97	12	19	23	44	1.84
643514--643619	36	2.9	37	70	2	97	11	17	26	44	1.83
643573--643651	37	2.1	37	81	4	88	10	18	24	46	1.80
646418--646452	18	1.9	18	88	11	54	37	5	22	34	1.78
649173--649240	29	2.4	29	82	2	93	42	16	7	33	1.76
649614--649656	19	2.3	18	88	11	61	58	0	0	41	0.98
652010--652046	18	2.1	18	89	0	56	54	0	2	43	1.14
657184--657219	14	2.6	14	100	0	72	44	0	0	55	0.99
657673--657735	8	7.8	8	77	8	65	61	3	34	0	1.12
660992--661028	12	3.3	12	78	21	53	35	13	16	35	1.88
662137--662184	21	2.3	21	78	3	53	60	6	2	31	1.33
667667--667794	62	2.0	63	84	1	168	40	19	21	18	1.91
668551--668638	37	2.4	37	82	0	104	15	17	22	44	1.86
681453--681496	21	2.0	22	91	4	72	31	0	6	61	1.22
689340--689407	20	3.4	21	78	8	61	25	2	10	61	1.42
695520--695553	17	1.9	18	88	5	52	50	5	14	29	1.67
705058--705111	24	2.2	24	86	0	72	27	16	5	50	1.68
707828--707874	21	2.2	21	80	0	58	44	10	14	29	1.79
710459--710615	67	2.4	68	84	5	196	38	10	17	33	1.84
712108--712146	12	3.2	12	82	17	53	0	28	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712108--712153	14	3.5	13	77	17	51	0	28	2	69	1.00
712243--712282	15	2.7	14	85	11	53	30	30	2	37	1.71
728030--728063	4	8.5	4	100	0	68	0	26	0	73	0.83
732100--732196	36	2.8	34	76	7	97	36	23	10	29	1.88
732100--732191	34	2.6	36	77	6	100	36	23	10	28	1.89
735169--735234	15	4.4	14	85	12	78	0	28	3	68	1.05
757400--757440	5	7.8	5	84	10	55	56	0	21	21	1.43
759007--759063	27	2.2	25	81	12	62	22	17	31	28	1.97
771844--772006	77	2.1	77	85	4	213	41	14	6	38	1.72
774362--774446	40	2.1	40	82	0	98	27	11	25	35	1.91
775157--775332	36	4.9	35	74	9	126	29	19	14	36	1.91
800761--801056	160	1.8	161	89	0	468	36	19	14	28	1.92
803230--803290	23	2.5	24	77	15	63	13	11	4	70	1.31
808237--808302	22	3.0	22	91	2	107	0	36	0	63	0.95
808218--808310	43	2.2	41	81	14	111	0	35	0	64	0.94
808212--808300	17	5.1	17	71	19	60	0	34	0	65	0.93
819898--819936	14	2.8	14	88	0	51	43	7	5	43	1.55
821673--821709	15	2.4	15	90	4	56	35	5	18	40	1.74
821684--821713	15	2.0	15	93	0	51	43	0	16	40	1.48
832887--832913	8	3.4	8	100	0	54	33	0	22	44	1.53
835101--835139	20	2.0	20	85	10	53	30	10	7	51	1.64
837373--837469	36	2.7	36	81	1	122	36	24	10	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
839469--839513	22	2.0	22	95	0	81	15	13	11	60	1.60
841514--841701	62	3.0	61	78	1	205	43	23	4	28	1.74
841818--841858	16	2.6	16	92	0	64	39	7	31	21	1.81
845716--845883	57	2.9	57	84	7	205	36	11	10	41	1.76
845747--845883	29	4.8	28	84	7	177	37	12	10	40	1.77
850461--850492	10	3.4	10	91	8	50	71	0	0	28	0.86
850698--850737	18	2.2	19	86	4	55	57	7	2	32	1.40
859308--859468	36	4.5	35	78	6	171	42	12	8	36	1.73
867150--867292	35	4.1	35	77	3	126	46	11	9	33	1.71
867150--867236	36	2.5	35	86	1	120	45	14	8	31	1.74
872989--873042	20	2.8	20	94	2	92	42	12	12	31	1.81
884716--884795	21	3.9	21	75	4	83	35	13	12	38	1.83
889452--889508	29	2.0	29	85	0	78	50	14	10	24	1.73
895030--895104	37	2.0	37	100	0	150	29	21	18	30	1.97
896091--896380	35	8.3	35	77	4	237	43	13	7	34	1.74
896091--896380	71	4.1	70	80	4	309	43	13	7	34	1.74
896070--896380	106	3.0	105	83	2	374	43	14	8	34	1.75
897688--897826	67	2.1	67	80	2	154	27	25	21	25	1.99
904681--904737	29	1.9	30	89	3	89	26	22	5	45	1.73
905866--906001	68	2.0	69	85	5	186	37	5	22	34	1.78
910765--910804	19	2.2	18	86	4	53	45	2	0	52	1.14
914050--914190	28	4.9	27	78	10	111	38	12	8	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
914041--914200	59	2.8	59	81	4	166	41	11	8	38	1.73
914041--914198	29	5.4	29	79	8	160	41	11	8	38	1.72
920485--920517	16	2.0	17	88	5	50	57	0	0	42	0.98
920798--920868	34	2.1	33	82	7	81	52	9	4	33	1.54
921958--922005	12	3.9	13	81	15	66	0	41	16	41	1.48
922660--922702	21	2.0	22	86	4	61	60	9	0	30	1.28
926445--926492	12	4.0	12	89	10	80	0	41	16	41	1.48
928289--928414	28	4.3	29	77	11	132	41	11	7	39	1.69
928289--928413	59	2.1	58	83	4	162	41	11	7	40	1.68
928289--928427	30	4.8	28	77	7	125	40	12	7	39	1.71

Tables:   1   2   3   4   5   6