genome.fa.s27.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397280.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_77.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1703557

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1575619--1575662	17	2.7	18	80	16	51	61	2	9	27	1.38
1578135--1578292	59	2.7	59	84	6	191	39	11	9	39	1.74
1578135--1578292	29	5.4	28	83	8	183	39	11	9	39	1.74
1581067--1581107	20	2.1	19	90	4	64	63	0	0	36	0.95
1580995--1581138	50	2.9	50	97	0	270	56	0	0	42	1.04
1592439--1592490	25	2.1	24	86	10	70	34	15	23	26	1.94
1595278--1595304	14	1.9	14	100	0	54	33	7	29	29	1.85
1595870--1595916	20	2.3	20	92	0	76	14	4	14	65	1.41
1601470--1601512	21	2.0	21	100	0	86	34	27	13	23	1.93
1606607--1606640	11	3.2	11	87	8	52	38	23	11	26	1.89
1607602--1607697	50	1.9	50	100	0	192	41	25	12	20	1.87
1617142--1617265	56	2.2	55	85	7	162	41	26	13	17	1.87
1617142--1617265	28	4.5	28	82	6	137	41	26	13	17	1.87
1620441--1620484	21	2.0	22	86	4	63	61	11	0	27	1.30
1626316--1626376	20	3.0	20	69	9	52	37	9	13	39	1.77
1626322--1626404	41	2.0	41	90	0	130	36	10	15	37	1.83
1646203--1646282	30	2.7	30	90	0	124	32	17	6	43	1.74
1646207--1646301	30	3.2	30	84	3	111	32	14	8	44	1.76
1648997--1649084	28	3.4	26	75	19	69	50	3	2	44	1.31
1649038--1649082	17	2.8	17	75	18	51	51	0	4	44	1.21
1649047--1649508	215	2.1	216	82	6	553	44	5	7	42	1.55
1649805--1649845	14	2.9	15	78	14	50	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1649805--1649849	16	2.9	16	80	9	58	57	0	0	42	0.98
1656088--1656145	15	3.8	15	84	4	71	36	32	5	25	1.78
1656085--1656150	15	4.3	15	80	3	69	36	30	4	28	1.77
1691258--1691290	17	1.9	17	88	11	50	42	3	12	42	1.57

Tables:   1   2   3   4   5   6

The End!