genome.fa.s27.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397280.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_77.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1703557

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1269782--1269817	19	1.9	18	94	5	63	47	0	0	52	1.00
1270555--1270890	170	2.0	170	78	6	358	38	11	13	36	1.81
1270504--1273226	171	15.9	172	71	9	1187	37	13	13	36	1.83
1271789--1273029	682	1.8	679	81	4	1530	37	13	12	36	1.82
1273267--1273705	182	2.4	180	79	5	438	35	10	16	37	1.83
1273698--1273722	11	2.3	11	100	0	50	28	8	8	56	1.57
1278935--1281128	182	12.2	180	72	7	950	36	11	14	37	1.83
1279650--1280677	545	1.9	546	78	4	1144	35	11	15	37	1.84
1281183--1281228	21	2.3	21	85	7	60	39	10	6	43	1.66
1284851--1285141	155	1.9	155	84	4	399	34	14	12	38	1.83
1285024--1287049	182	11.2	179	73	8	1119	36	12	13	37	1.82
1285255--1286072	360	2.3	361	81	5	954	36	11	13	38	1.81
1285024--1287049	363	5.6	361	73	9	1377	36	12	13	37	1.82
1286994--1287129	67	2.0	67	97	0	254	32	21	8	37	1.84
1287075--1288987	182	10.7	182	76	6	1489	36	12	13	37	1.83
1288224--1288892	359	1.9	360	81	7	840	36	11	14	37	1.82
1289050--1289139	29	3.2	28	87	6	105	23	31	16	28	1.96
1289074--1289139	29	2.3	29	97	0	123	22	27	18	31	1.97
1289518--1289543	2	13.0	2	100	0	52	50	0	0	50	1.00
1292058--1292090	15	2.1	16	88	5	50	24	9	12	54	1.66
1297697--1297721	6	4.2	6	100	0	50	36	0	0	64	0.94
1298881--1300053	168	6.9	169	74	11	762	33	13	14	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1298975--1299989	510	2.0	511	79	7	1082	33	13	13	38	1.85
1300447--1300506	31	1.9	31	82	0	75	41	3	33	21	1.70
1302632--1305586	170	17.4	171	74	10	1800	38	13	13	34	1.84
1302662--1305586	682	4.3	676	82	6	2862	38	13	13	34	1.84
1320088--1320141	24	2.2	24	77	6	56	20	3	3	72	1.16
1320079--1320139	19	3.2	19	80	15	63	19	4	1	73	1.10
1323828--1323885	30	2.0	30	82	3	73	32	0	8	58	1.28
1326335--1326380	20	2.2	22	88	7	69	32	0	6	60	1.22
1327077--1327230	15	10.8	15	65	21	82	53	3	2	39	1.33
1327136--1327209	22	3.4	21	75	17	80	55	2	5	36	1.37
1327076--1327230	43	3.7	43	92	3	235	53	3	2	40	1.33
1332961--1333070	47	2.4	45	86	5	143	45	12	4	37	1.63
1333037--1333106	36	2.0	35	83	8	90	37	12	7	42	1.71
1335146--1335185	15	2.6	16	88	8	64	55	0	0	45	0.99
1335144--1335250	21	4.8	21	71	17	81	51	0	2	44	1.22
1335788--1335911	29	4.3	29	81	6	153	37	10	8	43	1.70
1336279--1336308	3	10.0	3	92	0	51	33	3	0	63	1.11
1339109--1339155	23	2.0	24	84	12	62	34	25	19	21	1.96
1342659--1342908	129	2.0	122	91	5	401	31	14	20	33	1.93
1348095--1348146	25	2.1	24	92	3	86	15	3	21	59	1.52
1354798--1354847	17	2.8	18	76	14	50	40	2	4	54	1.31
1354891--1354935	16	2.9	15	74	6	54	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1361987--1362019	12	2.6	13	95	4	59	24	9	0	66	1.20
1362280--1362341	22	3.0	21	76	17	67	27	1	1	69	1.07
1361812--1362330	261	2.0	260	85	3	675	32	10	6	51	1.60
1364843--1364870	2	14.0	2	100	0	56	50	0	0	50	1.00
1367414--1367562	35	4.3	35	80	6	162	46	15	4	34	1.65
1367415--1367562	71	2.1	71	87	6	214	45	15	4	34	1.65
1374567--1374631	23	3.0	21	80	13	62	72	4	0	23	1.03
1374571--1374622	13	3.9	12	76	18	50	73	3	0	23	1.00
1374665--1374703	2	19.0	2	84	5	51	48	5	2	43	1.38
1384523--1384916	33	11.6	34	69	12	188	38	8	23	28	1.85
1385496--1385575	42	1.9	42	84	0	106	32	16	10	41	1.81
1386673--1386914	33	7.2	33	74	15	181	38	6	26	28	1.80
1386800--1386872	36	2.0	37	84	10	96	41	5	24	28	1.77
1386769--1386905	70	2.0	70	85	2	186	40	5	26	28	1.77
1386996--1387077	34	2.4	35	77	6	96	42	10	23	23	1.85
1393031--1393055	6	4.2	6	100	0	50	68	0	16	16	1.22
1393387--1393430	10	4.3	10	79	2	52	56	0	0	43	0.99
1393386--1393423	20	1.9	20	100	0	76	55	0	0	44	0.99
1401292--1401354	29	2.2	29	91	5	101	19	14	22	44	1.86
1409877--1410002	26	5.2	26	70	18	108	25	11	22	41	1.86
1409868--1410024	48	3.3	48	88	3	226	25	10	22	42	1.85
1409900--1410034	22	5.8	22	69	16	92	22	9	23	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1409980--1410047	22	3.0	22	80	2	73	19	8	23	48	1.76
1410783--1411185	203	2.0	203	86	1	558	22	12	24	41	1.88
1415066--1415099	17	2.0	17	94	0	59	26	5	38	29	1.80
1417140--1417491	23	15.3	23	67	2	107	34	23	11	31	1.90
1417140--1417606	115	4.1	116	86	2	577	34	22	10	32	1.88
1417591--1417634	23	1.9	23	90	0	70	31	15	13	38	1.87
1418616--1418659	21	2.0	22	91	4	72	31	0	6	61	1.22
1423481--1423525	20	2.2	20	84	4	54	57	8	0	33	1.30
1425349--1425500	74	2.1	74	83	0	187	35	23	12	28	1.91
1428146--1428459	158	2.0	158	84	0	412	30	26	8	34	1.87
1433538--1433571	16	2.1	16	94	0	59	2	47	0	50	1.16
1444232--1444456	77	2.9	75	84	9	285	37	12	9	40	1.75
1450597--1450641	20	2.2	21	84	11	58	48	11	2	37	1.51
1453434--1453474	21	2.1	19	86	9	55	60	9	0	29	1.28
1461153--1461192	19	2.0	20	90	4	64	42	0	0	57	0.98
1461285--1461310	11	2.4	11	100	0	52	26	0	0	73	0.84
1462801--1462863	23	2.6	25	78	11	62	34	4	3	57	1.36
1463721--1463764	20	2.2	20	84	12	54	43	2	0	54	1.12
1463929--1463960	2	16.0	2	100	0	64	50	0	0	50	1.00
1470640--1470707	30	2.3	30	89	0	109	52	5	29	11	1.61
1476441--1476507	35	1.9	35	81	0	80	41	19	16	22	1.90
1476755--1476859	29	3.6	29	87	2	131	25	20	6	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1479644--1479688	20	2.2	21	88	4	65	77	4	0	17	0.92
1480253--1480279	2	13.5	2	100	0	54	0	0	48	51	1.00
1493333--1493427	35	2.7	35	88	0	136	31	27	11	29	1.92
1496499--1496662	76	2.1	77	86	1	231	40	10	8	40	1.70
1499469--1499667	80	2.5	80	85	1	247	34	22	11	32	1.89
1500464--1500659	73	2.7	73	75	4	180	39	17	19	23	1.92
1501869--1501907	21	1.9	20	84	5	51	38	12	15	33	1.85
1502887--1502936	15	3.3	15	80	0	64	24	12	24	40	1.88
1502869--1502937	30	2.3	30	82	0	84	30	13	20	36	1.90
1503147--1503217	35	2.0	35	83	5	90	39	21	18	21	1.93
1505488--1505576	29	3.1	28	87	4	108	22	29	4	43	1.73
1507224--1507381	71	2.2	72	80	7	162	45	10	12	32	1.75
1507508--1507646	62	2.2	62	78	3	145	42	11	14	31	1.81
1509815--1509864	25	2.0	25	92	0	82	30	18	26	26	1.98
1512989--1513044	25	2.2	25	83	0	67	30	26	16	26	1.96
1513002--1513074	28	2.8	25	73	8	65	30	27	16	26	1.97
1515005--1515047	18	2.4	18	81	14	54	30	0	27	41	1.56
1527518--1527564	20	2.3	20	88	0	67	38	17	8	36	1.80
1528557--1528943	79	4.9	80	81	5	387	33	10	24	32	1.88
1528557--1528925	159	2.3	159	83	6	430	32	10	24	32	1.89
1544915--1544954	14	2.9	14	81	3	55	27	0	2	70	1.01
1544918--1544958	19	2.3	19	87	8	59	24	0	2	73	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1544913--1544960	18	2.7	17	78	9	51	27	0	2	70	0.98
1550861--1550917	24	2.3	25	85	8	73	15	8	8	66	1.43
1552137--1552245	21	5.2	21	70	8	96	40	1	5	52	1.35
1552132--1552245	42	2.7	42	97	0	210	40	1	5	52	1.34
1561315--1561454	28	5.0	28	79	11	151	42	10	12	35	1.77
1562665--1562726	32	2.0	31	87	9	90	37	4	11	46	1.61
1568718--1568871	29	5.4	28	77	9	143	42	8	8	40	1.65
1568715--1568871	57	2.8	55	80	8	165	42	8	8	40	1.66
1569024--1569057	17	2.0	17	88	11	52	35	0	17	47	1.48
1574990--1575029	18	2.3	18	91	4	64	52	22	5	20	1.65

Tables:   1   2   3   4   5   6