genome.fa.s1279.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001279.1 Hibiscus syriacus cultivar Beakdansim tig00002511_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6984689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  29  of  29  ( 3433 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6838959--6839089	65	2.1	62	85	4	172	28	23	15	32	1.95
6838970--6839110	65	2.2	65	82	5	171	29	24	15	31	1.96
6839490--6839566	33	2.3	33	91	4	120	32	25	9	32	1.87
6839957--6839995	2	20.0	2	94	5	71	48	0	0	51	1.00
6840054--6840104	20	2.6	19	84	9	59	27	15	19	37	1.92
6847735--6847785	24	2.1	24	88	0	75	31	13	39	15	1.87
6850125--6850170	24	2.0	23	83	12	58	67	4	15	13	1.38
6852702--6852741	20	2.0	21	90	9	66	20	17	15	47	1.83
6858065--6858112	22	2.1	23	96	3	89	14	29	4	52	1.60
6859787--6860028	36	6.6	36	78	16	225	45	2	5	46	1.39
6859787--6860068	36	7.5	38	78	15	195	43	3	5	46	1.44
6859941--6860010	29	2.2	32	87	9	101	47	2	5	44	1.41
6859914--6860052	69	2.0	71	86	8	196	46	4	5	43	1.47
6860064--6860118	17	3.2	17	82	7	67	40	3	3	52	1.36
6860057--6860114	18	3.1	19	85	7	66	43	3	5	48	1.42
6861769--6861797	12	2.3	13	94	5	51	31	0	0	68	0.89
6863081--6863134	22	2.5	22	78	0	63	38	22	9	29	1.85
6863402--6863426	6	4.2	6	100	0	50	36	48	16	0	1.46
6867148--6867175	14	2.0	14	100	0	56	28	7	7	57	1.52
6869324--6869359	6	6.2	6	90	6	56	36	44	19	0	1.51
6869324--6869359	11	3.1	12	88	8	56	36	44	19	0	1.51
6869324--6869359	17	2.1	18	94	5	65	36	44	19	0	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6869351--6869390	5	7.8	5	88	2	53	22	35	40	2	1.68
6876007--6876073	21	3.3	21	72	19	61	40	13	10	35	1.79
6877241--6877363	60	2.0	61	82	4	151	34	13	15	36	1.87
6879221--6879279	22	2.9	21	90	7	86	11	22	45	20	1.83
6879221--6879259	12	3.4	12	79	13	55	15	23	43	17	1.87
6888513--6888562	25	2.0	25	96	0	91	14	20	26	40	1.90
6891319--6891363	21	2.1	22	84	12	58	60	0	2	37	1.09
6891439--6891467	15	2.0	15	93	6	51	37	0	0	62	0.96
6894444--6894499	3	18.7	3	100	0	112	67	0	0	32	0.91
6894443--6894526	21	4.2	19	84	6	80	69	0	1	29	0.97
6894534--6894567	11	3.1	11	91	8	52	64	0	0	35	0.94
6895789--6895824	3	11.3	3	88	11	54	69	0	0	30	0.89
6895788--6895824	13	2.8	13	100	0	74	70	0	0	29	0.88
6895889--6896072	71	2.6	72	84	6	220	44	7	5	41	1.57
6895976--6896000	11	2.3	11	100	0	50	44	8	8	40	1.63
6896011--6896035	12	2.1	12	100	0	50	40	8	8	44	1.63
6895910--6896086	33	5.1	33	76	16	155	42	6	5	45	1.52
6896789--6897416	165	3.8	163	95	1	1067	22	21	26	29	1.99
6896789--6897416	331	1.9	328	93	2	1071	22	21	26	29	1.99
6902522--6902562	3	13.7	3	100	0	82	68	0	0	31	0.90
6902596--6902629	11	3.1	11	91	8	52	64	0	0	35	0.94
6903859--6903889	3	10.3	3	100	0	62	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6904037--6904099	12	5.3	12	71	3	56	42	7	7	41	1.63
6903968--6904152	35	5.2	35	78	13	157	43	6	5	44	1.53
6904714--6904834	43	2.8	44	86	5	165	23	19	21	35	1.96
6906481--6906532	17	3.2	17	75	10	54	50	13	3	32	1.60
6907685--6907719	14	2.6	14	86	4	54	68	0	0	31	0.90
6914122--6914169	20	2.4	20	82	0	60	31	18	18	31	1.95
6916429--6916454	3	8.7	3	100	0	52	34	0	0	65	0.93
6918828--6918886	20	2.9	20	80	9	66	25	16	22	35	1.95
6918873--6918948	21	3.6	21	81	0	98	30	18	21	30	1.97
6918957--6919006	20	2.5	20	86	0	73	32	22	14	32	1.93
6920345--6920407	27	2.3	25	80	20	65	61	1	11	25	1.38
6920367--6920407	13	3.1	14	75	10	50	63	0	9	26	1.25
6927979--6928014	17	2.1	17	94	0	63	66	2	13	16	1.36
6928235--6928279	23	2.0	23	95	0	81	24	15	8	51	1.72
6929292--6929347	26	2.3	23	79	14	58	8	26	1	62	1.35
6934125--6934954	419	2.0	410	97	2	1561	26	12	16	44	1.83
6962889--6963088	42	4.7	42	77	6	206	24	19	21	35	1.96
6962891--6963108	43	5.1	43	75	7	203	23	20	19	36	1.95
6962891--6963090	84	2.4	85	81	6	253	24	19	20	36	1.95
6966384--6966416	14	2.3	15	89	5	50	39	27	0	33	1.57
6966563--6966622	23	2.7	22	81	2	84	26	25	28	20	1.99
6971597--6971629	14	2.3	15	89	5	50	39	27	0	33	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6971776--6971835	23	2.7	22	84	2	84	26	26	28	18	1.98
6974675--6974726	24	2.1	24	82	7	59	46	3	1	48	1.31
6974867--6974917	25	2.0	25	84	0	66	45	11	15	27	1.81
6979424--6979510	35	2.5	34	82	12	106	54	9	8	28	1.61
6981645--6981866	111	2.0	111	97	0	417	45	10	7	36	1.68
6982143--6982275	50	2.7	49	79	9	135	21	28	32	18	1.96
6982845--6982886	22	1.9	22	85	0	57	38	9	9	42	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29

The End!