genome.fa.s1700.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001700.1 Hibiscus syriacus cultivar Beakdansim tig00003398_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2632955

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1314 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224390--224471	19	4.6	19	79	14	95	12	20	21	45	1.84
224426--224509	19	4.4	19	85	4	98	14	22	23	39	1.91
224981--225025	18	2.5	18	85	0	63	11	15	46	26	1.79
226341--226378	20	1.9	20	88	0	58	50	21	15	13	1.78
226639--226682	22	2.0	22	95	0	79	18	15	45	20	1.85
226849--226962	20	5.7	20	77	10	90	25	16	24	33	1.96
226951--227043	20	4.5	21	78	4	100	17	24	18	39	1.91
226890--227024	41	3.3	41	84	4	148	20	20	21	37	1.94
226951--227043	41	2.3	41	100	0	186	17	24	18	39	1.91
227645--227713	29	2.5	26	74	17	68	46	0	1	52	1.09
251872--251906	12	2.9	12	86	0	52	60	2	0	37	1.12
253517--253570	24	2.2	25	83	9	76	62	0	3	33	1.12
253665--253706	2	21.5	2	90	4	68	50	2	0	47	1.14
261600--261656	12	4.8	12	77	0	60	14	21	8	56	1.65
263096--263212	59	2.0	59	91	0	189	31	13	14	40	1.85
277272--277311	15	2.7	15	96	0	71	7	42	2	47	1.45
277934--278002	29	2.2	33	77	17	92	39	7	15	37	1.76
279297--279560	44	6.0	44	89	0	357	21	24	23	31	1.98
280450--280531	33	2.5	33	91	0	137	45	6	26	21	1.75
280437--280530	33	2.6	37	73	18	97	44	7	25	22	1.78
283693--283754	2	31.0	2	96	0	115	50	0	48	1	1.10
285545--285589	24	2.0	22	84	16	58	24	8	4	62	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286039--286089	24	2.2	23	82	3	57	62	0	1	35	1.06
289266--289293	13	2.2	13	100	0	56	50	28	0	21	1.49
291068--291110	2	21.5	2	100	0	86	51	0	0	48	1.00
291580--291642	20	2.9	21	79	9	65	15	25	34	23	1.95
300824--300857	11	3.1	11	100	0	68	26	26	8	38	1.85
302364--302417	21	2.6	21	87	0	72	20	11	31	37	1.88
302836--302872	13	2.8	13	91	0	65	45	10	8	35	1.69
310861--311076	98	2.2	98	89	1	335	42	18	8	31	1.80
311340--311378	20	2.0	20	94	0	69	30	30	15	23	1.95
311428--311550	64	1.9	64	81	5	149	31	19	19	29	1.96
319384--319412	14	2.0	15	93	6	51	6	3	27	62	1.37
319720--319744	12	2.1	12	100	0	50	40	0	24	36	1.55
319782--319821	13	3.2	13	86	10	57	42	7	2	47	1.45
320172--320336	65	2.6	63	83	4	204	32	22	18	27	1.97
325168--325210	10	4.7	10	78	21	58	58	20	11	9	1.61
325172--325204	16	2.1	16	100	0	66	57	24	12	6	1.57
326284--326329	24	1.9	24	86	0	65	60	17	8	13	1.56
326309--326336	14	2.0	14	100	0	56	50	21	14	14	1.78
326795--326837	19	2.4	18	81	11	52	48	4	4	41	1.44
326802--326838	19	1.9	19	88	0	56	48	5	5	40	1.49
326962--326988	8	3.4	8	100	0	54	62	11	0	25	1.28
326874--327055	97	1.9	97	98	0	355	27	20	13	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327794--327835	3	14.0	3	100	0	84	66	0	0	33	0.92
329599--329643	6	6.7	7	80	14	51	31	2	0	66	1.04
329611--329659	3	16.0	3	82	4	62	32	2	2	63	1.17
331126--331354	115	2.0	113	80	9	259	36	9	9	44	1.68
338962--339722	114	6.8	115	91	1	1065	31	15	20	32	1.94
342536--343045	113	4.5	113	97	0	948	39	14	16	29	1.89
342950--343118	73	2.3	73	83	1	196	34	16	17	31	1.92
342837--343197	186	1.9	185	85	0	497	36	15	17	30	1.91
343025--343383	113	3.2	113	86	1	479	37	14	19	28	1.90
342724--343344	299	2.1	299	85	1	834	37	14	17	30	1.90
343347--343416	36	1.9	36	97	0	131	48	12	21	17	1.80
343358--343416	17	3.4	17	66	25	50	50	11	22	15	1.76
343664--343709	3	15.0	3	81	4	56	32	2	2	63	1.19
343664--343716	25	2.1	25	82	6	63	35	1	1	60	1.19
345302--345343	20	2.2	19	86	4	57	33	0	2	64	1.07
345198--345430	120	2.0	117	82	5	281	36	8	9	45	1.66
354329--354385	20	2.6	22	78	13	64	29	22	22	24	1.99
354793--354852	24	2.5	24	81	2	59	41	1	25	31	1.65
354958--355041	18	4.7	18	71	2	71	26	21	29	22	1.99
354955--355032	36	2.2	36	90	2	122	24	20	30	24	1.98
354955--355040	35	2.4	36	88	1	129	24	20	31	23	1.98
361464--361489	13	2.0	13	100	0	52	15	0	7	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361420--361486	27	2.5	28	75	17	70	19	0	8	71	1.12
361417--361491	38	2.0	36	82	10	89	20	0	9	70	1.14
361649--361694	18	2.6	18	80	13	58	19	8	2	69	1.25
372143--372256	60	1.9	59	83	3	149	51	13	21	13	1.74
372236--372272	12	3.0	12	92	4	56	83	5	10	0	0.79
373365--373612	99	2.5	99	92	0	397	31	26	21	20	1.98
375637--375718	43	2.0	43	83	13	109	25	0	8	65	1.20
380408--380488	23	3.6	22	78	6	92	24	24	23	27	2.00
382790--382934	65	2.2	65	79	3	159	28	20	18	32	1.96
386637--386690	17	3.2	17	94	0	90	31	31	12	24	1.93
389564--389625	7	9.2	6	78	15	52	22	1	29	46	1.61
390585--390694	18	6.1	18	78	4	114	25	18	30	26	1.98
390585--390691	36	3.0	36	87	0	151	24	17	30	27	1.97
395252--395293	21	2.0	21	95	0	75	23	21	28	26	1.99
395321--395360	20	1.9	21	85	10	55	37	37	10	15	1.80
395575--395644	34	2.1	32	86	5	95	31	15	30	22	1.95
396897--396955	12	4.8	12	76	12	50	47	1	3	47	1.29
396940--396973	16	2.1	16	89	10	52	47	0	5	47	1.26
406116--406155	21	1.9	21	89	0	62	10	25	40	25	1.86
406136--406198	20	2.9	21	79	9	65	15	25	34	23	1.95
409995--410034	21	1.9	21	85	10	55	35	10	2	52	1.48
412509--412541	14	2.4	14	94	0	57	33	6	30	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419802--419917	61	1.9	61	84	7	155	37	4	25	32	1.76
420533--420563	11	2.8	11	100	0	62	0	29	16	54	1.42
421590--421624	17	2.0	18	88	5	54	37	0	0	62	0.95
421914--421952	21	1.9	20	89	5	60	38	0	5	56	1.22
422033--422062	11	2.7	11	94	0	51	43	3	0	53	1.17
422301--422336	2	19.0	2	88	11	58	47	0	0	52	1.00
427239--427291	2	26.5	2	100	0	106	50	0	0	49	1.00
427625--427728	3	35.3	3	76	11	99	62	1	2	32	1.21
427711--427766	25	2.3	25	78	12	62	60	1	1	35	1.17
429106--429202	3	33.3	3	85	6	137	63	0	0	36	0.94
429560--429997	112	3.8	112	80	5	423	27	19	15	38	1.91
430322--430378	22	2.6	22	94	0	96	36	14	17	31	1.89
430749--430991	54	4.5	54	84	0	306	30	21	11	36	1.90
430749--430986	108	2.2	108	93	0	413	30	21	12	36	1.90
431888--432043	75	2.1	75	87	0	222	31	20	17	30	1.95
438124--438154	16	1.9	16	93	0	53	38	0	12	48	1.42
438244--438284	14	2.9	14	85	0	55	58	9	14	17	1.62
439931--439980	23	2.2	23	85	7	66	72	0	8	20	1.10
446284--446322	20	1.9	21	85	15	55	48	0	0	51	1.00
447662--447723	23	2.7	23	82	0	88	29	24	25	20	1.99
448836--449286	112	3.9	111	81	6	490	24	19	16	39	1.92
449339--449443	36	2.9	37	75	7	124	37	12	18	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449293--449443	73	2.1	73	89	2	232	34	13	19	32	1.91
450517--450668	54	2.9	53	86	4	191	30	20	12	36	1.90
451631--451695	30	2.2	30	97	0	121	32	9	10	47	1.70
468771--468848	41	1.9	40	89	7	122	74	1	16	7	1.11
468816--468859	23	1.9	23	95	0	79	75	2	18	4	1.09
468754--468855	48	2.1	48	81	3	125	73	0	17	7	1.12
468768--468938	70	2.3	71	80	13	195	73	1	18	7	1.13
468831--468966	14	9.4	14	79	15	118	71	1	19	7	1.18
468767--468965	7	28.7	7	72	19	107	73	1	18	7	1.12
470298--470606	55	5.7	55	86	2	342	27	17	26	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11