genome.fa.s1736.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001736.1 Hibiscus syriacus cultivar Beakdansim tig00003507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1778036

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 999 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238984--239085	32	3.2	32	91	4	161	44	14	6	34	1.72
241399--241430	12	2.7	12	95	0	55	15	18	18	46	1.84
245935--245964	14	2.1	14	100	0	60	36	0	0	63	0.95
252851--252959	31	3.5	31	79	7	130	34	19	16	29	1.94
256662--256737	2	38.0	2	100	0	152	50	0	0	50	1.00
257040--257106	30	2.2	31	81	2	73	32	26	20	19	1.97
257065--257192	31	4.1	31	74	6	123	32	20	17	28	1.96
259441--259482	20	2.0	22	86	9	61	47	11	9	30	1.72
265368--265406	20	2.0	20	85	10	53	61	0	5	33	1.18
270924--270984	3	21.0	3	75	21	51	31	0	0	68	0.89
270928--270984	25	2.4	24	86	13	75	31	0	0	68	0.90
271496--271538	2	21.5	2	100	0	86	48	0	0	51	1.00
271532--271600	21	3.1	21	72	15	59	20	4	1	73	1.07
271575--271634	27	2.2	28	82	8	70	20	6	0	73	1.05
271540--271624	28	3.1	28	74	14	79	18	4	1	75	1.04
272031--272313	110	2.6	110	95	0	503	34	22	16	26	1.95
275710--275796	33	2.6	34	88	1	115	26	10	19	43	1.83
275723--275796	33	2.2	33	92	0	121	24	9	18	47	1.78
275846--275927	3	27.3	3	76	16	57	68	0	0	31	0.90
275843--275928	31	2.8	31	79	11	90	68	0	0	31	0.90
276975--277011	18	2.1	18	94	0	65	16	10	8	64	1.47
277021--277065	24	1.9	24	86	4	65	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277141--277173	17	2.0	17	88	5	50	30	3	0	66	1.06
277001--277239	120	2.0	121	90	4	376	41	3	3	51	1.36
277013--277268	120	2.1	121	85	7	335	43	3	3	50	1.35
277264--277292	2	14.5	2	100	0	58	51	0	0	48	1.00
280127--280163	19	2.0	19	89	5	58	56	0	0	43	0.99
282453--282516	24	3.0	21	82	13	60	35	3	1	59	1.23
282463--282519	26	2.2	26	87	6	80	38	1	1	57	1.19
282727--282770	3	14.0	3	85	4	52	36	4	0	59	1.18
293270--293294	9	2.8	9	100	0	50	92	0	8	0	0.40
293337--293373	16	2.3	16	86	13	58	83	2	13	0	0.74
296716--296780	2	32.5	2	100	0	130	49	0	0	50	1.00
296796--296842	15	3.1	15	76	14	51	14	4	0	80	0.85
299123--299202	40	2.0	40	100	0	160	40	10	20	30	1.85
299418--299463	19	2.3	20	85	7	58	23	4	0	71	1.03
303985--304016	15	2.1	15	94	0	55	43	0	18	37	1.51
305823--306030	93	2.2	93	92	0	335	33	24	15	26	1.95
320410--320435	13	2.0	13	100	0	52	23	7	0	69	1.14
325571--325626	23	2.4	24	81	3	69	57	17	14	10	1.65
325803--325842	14	2.9	14	92	0	71	52	22	12	12	1.72
325803--325856	28	1.9	28	84	0	72	53	20	12	12	1.71
325802--325859	14	4.4	14	75	16	61	55	18	12	13	1.69
328513--328550	20	1.9	20	89	10	60	28	0	2	68	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328670--328723	26	2.0	28	85	10	76	29	0	3	66	1.09
332529--332575	23	2.0	23	84	8	60	27	14	23	34	1.94
333001--333027	2	13.5	2	100	0	54	48	0	0	51	1.00
337447--337523	34	2.3	34	90	4	120	40	0	15	44	1.47
337855--337899	23	2.0	23	90	0	72	17	28	24	28	1.97
340745--340772	14	2.0	14	100	0	56	35	0	7	57	1.26
341549--341581	17	2.0	17	94	5	59	51	24	6	18	1.68
342084--342175	33	2.8	33	88	3	125	21	13	25	40	1.89
342084--342175	32	2.8	32	87	6	123	21	13	25	40	1.89
343135--343189	2	29.0	2	82	10	71	52	0	0	47	1.00
345680--346444	271	2.7	275	81	7	810	25	18	21	34	1.96
352847--352888	22	2.0	22	85	4	59	33	16	23	26	1.96
352986--353130	18	7.4	18	87	6	137	22	19	29	28	1.98
353040--353124	22	3.9	22	90	0	125	27	17	27	28	1.98
355020--355057	20	1.9	20	84	10	51	42	15	0	42	1.47
355214--355282	23	3.0	23	80	0	93	30	24	26	18	1.98
355631--355676	2	23.0	2	100	0	92	50	0	0	50	1.00
359970--360104	18	6.8	18	68	18	81	22	20	26	30	1.98
360008--360088	22	3.7	22	84	0	117	27	19	22	30	1.98
359970--360104	44	3.4	40	76	11	134	22	20	26	30	1.98
361460--361511	24	2.2	24	100	0	104	34	7	15	42	1.75
361454--361511	24	2.3	26	91	8	79	34	8	15	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365716--365782	31	2.2	31	97	0	125	31	23	13	31	1.93
366680--366718	8	4.6	8	87	12	60	87	0	0	12	0.55
366680--366718	18	2.3	17	91	8	62	87	0	0	12	0.55
367356--367388	2	16.5	2	100	0	66	48	0	0	51	1.00
372307--372342	2	18.0	2	100	0	72	50	0	0	50	1.00
373336--373388	24	2.2	23	80	9	61	20	54	0	24	1.44
375719--375752	18	1.9	17	88	5	50	14	5	5	73	1.21
377042--377117	29	2.6	29	78	0	80	25	26	30	18	1.98
377266--377341	23	3.3	22	89	7	116	21	11	15	51	1.75
377561--377666	43	2.4	45	87	6	162	34	0	16	47	1.54
377656--377695	21	1.9	21	94	0	71	27	2	12	57	1.48
377751--377803	28	1.9	27	88	3	79	32	1	16	49	1.57
377750--377814	27	2.3	29	82	10	82	36	1	15	46	1.55
378020--378059	21	1.9	21	100	0	80	27	0	15	57	1.38
380616--380651	14	2.6	13	91	8	54	61	0	0	38	0.96
380665--380745	14	6.1	14	77	11	80	43	7	2	46	1.45
380638--380745	26	4.2	26	86	10	141	45	7	1	45	1.42
380654--380814	11	13.2	11	67	25	67	44	11	1	42	1.51
381278--381346	21	3.5	20	70	20	56	47	8	0	43	1.34
381283--381452	49	3.4	49	93	0	277	45	11	0	42	1.44
381278--381767	120	4.3	109	77	13	468	45	11	0	42	1.44
381382--381767	60	6.4	60	92	1	630	44	12	0	42	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381283--381486	98	2.1	98	83	8	263	46	10	0	42	1.42
381651--381739	25	3.2	25	64	27	61	46	10	0	43	1.37
381731--381763	13	2.4	14	90	5	50	39	15	0	45	1.46
384780--384822	22	2.0	22	86	9	61	53	13	0	32	1.41
385082--385112	5	6.2	5	92	0	53	58	0	0	41	0.98
385296--385350	21	2.7	21	83	8	69	36	25	16	21	1.94
385297--385365	20	3.4	20	84	6	77	31	27	17	23	1.97
386181--386227	24	2.0	24	95	0	85	27	21	17	34	1.95
387186--387262	21	3.7	21	74	6	75	20	18	40	20	1.92
387168--387270	42	2.5	42	78	0	125	23	20	34	21	1.96
387773--387821	20	2.5	20	93	0	80	36	24	22	16	1.94
387826--387864	19	2.0	20	85	14	55	51	20	12	15	1.76
387936--388004	20	3.5	20	88	7	104	15	23	26	34	1.95
389911--390027	20	6.2	20	70	11	77	40	23	17	18	1.91
390568--390641	21	3.6	21	73	12	73	24	16	22	36	1.94
390624--390690	21	3.2	21	93	0	107	35	17	23	22	1.95
391025--391078	28	1.9	28	96	0	99	57	12	0	29	1.36
391021--391085	28	2.3	28	84	10	96	55	10	0	33	1.35
391055--391103	21	2.3	21	85	3	71	53	16	0	30	1.43
391652--391780	29	4.4	29	90	0	168	26	28	31	13	1.93
394426--394482	30	1.9	29	89	3	87	36	7	0	56	1.27
394539--394611	30	2.4	30	80	13	87	39	10	1	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394674--394840	30	5.7	27	74	14	118	55	1	5	37	1.33
394727--394773	19	2.5	19	72	6	51	68	0	0	31	0.90
395062--395102	19	2.1	19	86	4	55	58	2	0	39	1.11
395269--395310	21	2.0	22	85	4	59	57	0	7	35	1.26
395911--395965	16	3.3	18	74	20	57	32	0	1	65	1.03
402093--402133	15	2.7	15	88	7	57	0	2	14	82	0.76
402101--402133	7	4.6	7	96	3	57	0	0	12	87	0.53
405831--405947	60	2.0	60	81	6	139	27	23	23	26	2.00
407570--407659	23	3.8	24	75	5	85	32	22	16	28	1.96
412024--412204	60	3.0	58	77	4	173	34	18	3	42	1.69

Tables:   1   2   3   4   5   6   7   8   9