Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001736.1 Hibiscus syriacus cultivar Beakdansim tig00003507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1778036

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 999 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1716554--1716600
20
2.4
19
82
10
67
53
10
17
19
1.72
1716563--1716605
20
2.3
19
88
11
63
51
11
16
20
1.75
1718254--1718291
15
2.5
15
95
0
67
26
7
34
31
1.85
1718837--1718880
21
2.1
21
91
0
70
40
11
31
15
1.83
1718914--1718978
33
2.0
33
90
3
105
29
0
47
23
1.52
1720769--1720817
19
2.6
19
93
0
80
30
2
10
57
1.43
1720936--1722103
198
5.9
198
96
0
2138
36
14
18
30
1.91
1723572--1723630
12
4.9
12
87
0
82
35
10
33
20
1.86
1723569--1723660
6
15.3
6
77
0
58
36
7
32
22
1.83
1723584--1723664
3
27.0
3
71
0
63
35
6
32
25
1.81
1723572--1723642
36
2.0
36
91
0
115
35
9
33
21
1.86
1723580--1723664
12
7.1
12
82
0
80
35
7
31
25
1.83
1727944--1728008
25
2.6
25
80
0
85
35
9
13
41
1.77
1728352--1728424
23
3.2
23
88
0
110
34
5
20
39
1.76
1728352--1728449
46
2.1
45
81
7
108
33
7
17
41
1.77
1728839--1728911
23
3.2
23
88
0
110
34
5
20
39
1.76
1728839--1728936
46
2.1
45
81
7
108
33
7
17
41
1.77
1729328--1729400
23
3.2
23
86
0
101
32
5
20
41
1.75
1728008--1729566
487
3.2
489
98
0
3018
39
7
12
41
1.71
1729759--1729831
23
3.2
23
92
0
119
34
5
21
38
1.77
1729126--1730182
431
2.5
431
97
0
1976
41
8
11
38
1.71
1735056--1735099
23
1.9
23
85
0
61
40
18
15
25
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1735063--1735116
23
2.3
23
80
0
63
42
16
16
24
1.88
1735545--1735635
3
30.3
3
100
0
182
32
0
0
67
0.91
1735898--1736179
153
1.9
150
87
5
415
50
6
16
26
1.70
1741293--1741342
3
16.7
3
91
8
84
68
0
0
32
0.90
1741694--1742140
115
4.0
110
83
8
535
28
17
14
38
1.90
1742928--1743215
94
3.1
93
92
3
488
35
19
15
30
1.92
1748399--1748448
3
16.7
3
91
8
84
68
0
0
32
0.90
1748797--1749131
115
3.0
111
85
4
424
28
17
15
38
1.91
1749909--1750195
94
3.1
93
93
4
497
35
19
15
29
1.92
1751148--1751180
7
4.7
7
85
14
50
0
15
0
84
0.61
1751149--1751187
15
2.6
15
88
12
62
0
15
0
84
0.62
1762282--1762334
23
2.3
24
78
12
58
54
0
5
39
1.24
1764018--1764093
3
25.3
3
86
5
82
60
2
0
36
1.11
1764350--1764396
2
24.0
2
91
4
78
48
2
0
48
1.13
1764848--1764885
19
2.0
19
94
0
67
55
0
5
39
1.23
1769593--1769687
16
5.6
17
71
20
65
58
2
1
37
1.17
1772466--1772589
45
2.8
45
90
1
205
39
7
22
30
1.81

Tables:   1   2   3   4   5   6   7   8   9

The End!