genome.fa.s1736.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001736.1 Hibiscus syriacus cultivar Beakdansim tig00003507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1778036

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 999 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566194--566256	31	2.0	32	87	12	94	63	4	6	25	1.38
567747--567896	73	2.1	72	92	3	248	49	5	2	42	1.39
574936--575000	21	3.1	21	79	0	76	38	21	16	23	1.93
576389--576419	8	3.9	8	95	0	53	41	0	32	25	1.56
578113--578137	13	1.9	13	100	0	50	56	24	0	20	1.43
579884--579916	17	1.9	17	100	0	66	36	12	9	42	1.74
581065--581110	21	2.2	21	96	0	83	52	6	19	21	1.69
582664--582694	16	1.9	16	93	0	53	35	22	3	38	1.71
589541--590154	55	11.1	55	87	1	802	33	7	15	43	1.76
590361--590785	200	2.1	199	86	3	588	32	17	15	35	1.91
590795--590862	3	22.7	3	100	0	136	67	0	0	32	0.91
592381--592566	102	1.8	101	85	5	259	26	19	16	37	1.92
600634--600663	15	2.0	15	93	0	51	43	20	20	16	1.88
604893--604917	13	1.9	13	100	0	50	32	24	0	44	1.54
610455--610512	25	2.3	25	100	0	116	48	6	8	36	1.61
613625--613695	23	3.3	23	65	15	60	40	1	5	52	1.34
613639--613710	15	5.1	15	68	17	55	43	1	2	52	1.24
620103--620147	14	3.3	14	87	3	65	22	15	2	60	1.46
620113--620151	18	2.2	18	86	9	53	17	17	5	58	1.56
621794--621831	2	19.0	2	100	0	76	50	0	0	50	1.00
626448--626478	2	15.5	2	93	0	53	51	3	0	45	1.17
629738--629803	23	2.9	23	75	8	71	18	16	15	50	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632979--633048	19	3.7	19	70	21	56	38	22	5	32	1.78
633036--633114	38	2.1	38	80	4	88	34	21	8	35	1.85
632977--633089	57	2.0	57	85	0	154	36	23	8	31	1.85
632996--633115	19	6.3	19	63	18	52	35	20	9	35	1.84
638343--638505	82	2.0	81	98	1	317	39	23	6	31	1.79
640378--640403	2	13.0	2	100	0	52	50	0	0	50	1.00
641428--641465	19	2.0	19	89	0	58	26	31	21	21	1.98
645722--645788	29	2.3	29	94	0	116	20	28	26	23	1.99
649767--649979	69	3.1	69	83	2	250	27	24	20	27	1.99
654052--654101	26	1.9	26	84	8	66	58	4	6	32	1.41
654256--654307	15	3.1	16	78	15	52	21	21	3	53	1.61
656154--656187	17	2.0	17	94	0	59	20	47	20	11	1.81
656149--656211	22	2.8	24	73	11	78	20	47	19	12	1.81
656212--656308	29	3.4	27	83	8	113	32	2	18	46	1.61
663578--663733	29	5.4	28	82	6	170	33	3	20	42	1.68
666442--666500	28	2.1	28	96	0	109	45	23	6	23	1.76
671948--671997	24	2.1	24	96	0	91	50	8	10	32	1.65
672187--672224	20	1.9	20	94	0	67	39	13	13	34	1.83
671972--672503	191	2.7	196	82	7	611	39	12	16	31	1.86
673903--674267	199	1.8	199	92	1	624	38	13	12	35	1.82
674186--674532	131	2.7	131	86	4	463	40	12	13	33	1.82
675949--676054	52	2.0	52	90	0	167	17	27	14	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676069--676280	35	6.0	35	87	1	289	21	24	19	34	1.96
692949--693049	31	3.3	31	88	0	157	20	16	16	45	1.85
694916--694984	30	2.3	30	100	0	138	39	15	2	42	1.63
695736--695782	5	9.8	5	78	17	55	76	0	2	21	0.89
695738--695789	14	3.8	14	76	19	56	73	0	1	25	0.94
695736--695782	19	2.5	20	83	16	64	76	0	2	21	0.89
695933--695958	2	13.0	2	100	0	52	50	0	0	50	1.00
696061--696092	2	16.0	2	100	0	64	50	0	0	50	1.00
696893--697045	32	5.2	32	72	16	118	24	37	22	15	1.93
696901--697068	82	2.0	83	83	2	212	22	38	23	16	1.93
696901--697068	26	6.1	26	72	14	106	22	38	23	16	1.93
698144--698185	21	2.0	21	86	4	59	45	7	16	30	1.74
698945--699085	42	3.5	42	77	14	172	24	4	19	51	1.66
699012--699091	34	2.4	34	100	0	160	25	5	16	53	1.62
698936--699085	76	2.0	72	89	5	228	24	4	19	52	1.65
700871--700951	3	26.7	3	92	2	135	64	0	0	35	0.94
701198--701276	31	2.5	31	87	4	115	31	15	17	35	1.91
719350--719443	21	4.5	21	69	20	54	58	0	2	39	1.10
719353--719405	19	2.8	18	70	25	54	58	0	1	39	1.09
719349--719443	41	2.3	41	85	10	138	57	0	2	40	1.10
719348--719412	19	3.3	19	69	23	53	58	0	1	40	1.07
720975--721040	3	21.7	3	75	9	62	57	0	3	39	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724763--724815	3	17.3	3	84	3	70	41	0	0	58	0.98
724771--724815	16	2.9	16	96	3	83	42	0	0	57	0.98
725050--725129	22	3.6	22	86	0	97	15	46	16	22	1.84
726288--726359	25	2.9	25	74	15	69	27	4	0	68	1.08
726759--726843	3	29.3	3	85	11	115	35	0	0	64	0.94
726759--726836	14	5.7	14	88	8	117	34	0	0	65	0.93
726755--726843	17	5.5	17	83	15	118	34	0	0	65	0.93
727602--727639	18	2.1	18	85	9	51	34	5	0	60	1.19
727594--727680	28	3.1	28	81	8	79	28	3	1	66	1.15
737452--737677	112	2.0	112	99	0	443	34	18	18	28	1.94
737356--737794	243	1.8	243	95	0	806	32	17	18	30	1.95
737995--738072	3	26.3	3	74	7	70	38	0	1	60	1.05
738286--738341	22	2.5	22	85	5	69	17	46	10	25	1.80
739971--740033	3	22.0	3	84	9	78	36	0	0	63	0.95
739975--740039	14	4.5	14	76	12	60	35	0	0	64	0.94
739971--740033	20	3.3	20	89	8	87	36	0	0	63	0.95
739972--740035	17	3.9	17	80	12	80	37	0	0	62	0.95
740246--740284	2	19.5	2	94	0	69	51	2	0	46	1.14
742648--742697	25	2.0	25	100	0	100	32	12	8	48	1.69
744219--744310	46	2.0	46	100	0	184	21	15	10	52	1.73
754480--754529	26	1.9	26	88	8	75	72	2	6	20	1.16
754551--754623	26	2.8	25	75	8	65	73	1	5	19	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
754744--754790	19	2.4	19	75	10	51	65	4	6	23	1.33
755356--755466	34	3.4	34	83	15	153	30	10	16	42	1.82
755519--755771	36	7.1	36	76	9	234	40	12	20	26	1.87
755876--756085	116	1.8	116	89	2	332	23	20	23	31	1.98
757500--757557	14	4.2	13	78	20	55	5	13	3	77	1.07
761151--761271	62	1.9	63	83	8	158	31	19	19	29	1.96
761151--761271	31	3.9	31	75	9	93	31	19	19	29	1.96
761669--761721	24	2.3	23	83	9	63	37	13	1	47	1.54
765190--765221	12	2.4	14	90	10	50	37	28	0	34	1.57
765454--765543	32	2.8	32	76	12	96	33	16	15	34	1.91
765899--765971	37	2.0	37	83	5	94	34	15	2	47	1.59
767413--767462	26	1.9	26	88	8	75	72	2	6	20	1.16
767542--767732	77	2.4	77	73	17	178	63	2	3	30	1.25
767686--767732	19	2.4	19	75	10	51	65	4	6	23	1.33
768175--768208	13	2.6	13	100	0	68	44	8	14	32	1.76
768232--768378	37	4.0	37	94	0	258	30	16	12	40	1.85
774173--774259	33	2.7	34	82	8	110	29	19	14	35	1.92
785782--785819	20	1.9	20	94	0	67	39	15	18	26	1.91
796938--796977	8	5.5	8	77	22	52	15	40	25	20	1.90
796898--796943	18	2.6	18	96	0	83	17	52	19	10	1.74
796920--796977	13	4.3	13	88	4	80	15	43	22	18	1.88
796951--796998	15	2.7	18	84	15	57	20	31	25	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
799417--799548	48	2.8	48	76	13	137	22	16	18	42	1.89
799434--799548	24	4.8	24	86	6	153	23	17	18	40	1.91
799485--799557	24	3.0	24	86	4	76	21	16	17	43	1.87
801729--801768	8	5.5	8	77	22	52	15	40	25	20	1.90
801724--801768	13	3.3	13	90	6	63	15	42	24	17	1.88
801742--801789	15	2.7	18	84	15	57	20	31	25	22	1.98
804208--804339	48	2.8	48	76	13	137	22	16	18	42	1.89
804225--804339	24	4.8	24	86	6	153	23	17	18	40	1.91
804276--804348	24	3.0	24	86	4	76	21	16	17	43	1.87
805256--805376	21	5.8	21	82	7	113	30	27	21	20	1.98

Tables:   1   2   3   4   5   6   7   8   9