genome.fa.s1736.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001736.1 Hibiscus syriacus cultivar Beakdansim tig00003507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1778036

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 999 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1507044--1507097	24	2.2	24	93	0	90	40	20	18	20	1.91
1507916--1508026	20	5.5	20	82	6	134	24	17	28	29	1.97
1507973--1508048	21	3.7	21	75	10	84	19	13	27	39	1.89
1507916--1508047	41	3.2	41	87	3	169	22	16	28	31	1.96
1507957--1508068	41	2.7	40	83	8	111	21	15	25	37	1.92
1508056--1508111	21	2.6	22	80	5	69	33	17	21	26	1.96
1508155--1508191	19	1.9	19	88	0	56	24	16	27	32	1.96
1509450--1509496	18	2.6	19	83	10	62	27	12	12	46	1.78
1512182--1512219	16	2.2	18	86	9	53	28	0	2	68	1.03
1514387--1514436	13	4.1	12	72	23	50	24	0	10	66	1.22
1516879--1516914	16	2.2	16	95	0	63	69	2	0	27	1.02
1519509--1519555	18	2.6	18	82	0	58	29	12	14	42	1.83
1523005--1523632	84	7.6	84	82	8	659	32	16	17	33	1.92
1523005--1523649	167	3.9	168	83	7	675	32	16	17	33	1.92
1523010--1523693	159	4.2	159	80	9	532	32	16	16	33	1.92
1523861--1523895	2	17.5	2	100	0	70	48	0	0	51	1.00
1524309--1524339	2	15.5	2	100	0	62	51	0	0	48	1.00
1524956--1524994	3	12.7	3	83	5	51	35	2	0	61	1.10
1532999--1533545	134	4.1	133	84	2	657	35	19	14	30	1.92
1536137--1536212	9	9.2	8	72	18	50	60	0	0	39	0.97
1536125--1536208	34	2.5	34	96	1	152	59	0	0	40	0.97
1537128--1537163	18	2.0	18	100	0	72	16	22	33	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1543236--1543286	21	2.5	20	84	6	59	49	9	15	25	1.75
1544251--1544290	21	1.9	21	94	0	71	27	30	15	27	1.96
1544362--1544395	18	1.9	17	88	5	50	17	20	5	55	1.62
1549633--1549674	21	2.0	22	90	4	68	23	30	23	21	1.99
1550521--1550561	21	2.0	21	100	0	82	26	24	19	29	1.98
1550526--1550574	21	2.3	21	85	0	62	30	26	18	24	1.98
1551399--1551436	20	1.9	20	89	10	60	21	34	31	13	1.91
1552217--1552260	23	1.9	23	90	0	70	18	29	25	27	1.98
1552369--1552403	18	1.9	18	94	0	61	17	22	31	28	1.96
1554118--1554146	15	1.9	15	100	0	58	41	3	0	55	1.17
1555559--1555637	2	39.5	2	93	0	131	45	0	1	53	1.08
1556899--1556923	2	12.5	2	100	0	50	48	0	0	52	1.00
1566998--1567040	15	2.8	15	89	3	68	83	4	11	0	0.78
1567081--1567121	8	5.5	8	77	16	52	85	2	12	0	0.70
1567082--1567121	14	2.7	15	84	7	64	85	2	12	0	0.71
1568197--1568882	106	6.5	106	89	1	975	34	25	18	21	1.96
1572929--1573085	78	2.0	78	96	0	287	35	8	19	36	1.83
1576207--1576256	19	2.5	21	87	9	77	60	10	12	18	1.59
1576266--1576407	59	2.4	59	83	8	173	37	4	23	35	1.74
1576251--1576411	60	2.7	60	79	12	181	37	4	23	34	1.75
1579568--1579601	17	1.9	17	88	5	50	58	8	5	26	1.51
1580081--1580131	26	2.0	26	84	0	66	33	1	13	50	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1583327--1583365	3	12.7	3	89	10	53	30	0	0	69	0.89
1583328--1583361	11	3.1	11	91	8	52	32	0	0	67	0.91
1583327--1583370	14	3.2	14	90	9	65	29	0	0	70	0.88
1583369--1583434	3	22.0	3	82	11	82	60	0	0	39	0.97
1583716--1584986	223	5.7	223	95	1	2204	27	19	15	37	1.91
1583707--1584986	110	11.5	111	95	2	2157	27	19	15	38	1.91
1585425--1585498	22	3.4	22	90	0	112	36	14	13	35	1.86
1588164--1588541	165	2.3	164	93	2	625	38	21	13	26	1.90
1588164--1588541	83	4.6	81	96	1	621	38	21	13	26	1.90
1590685--1590735	23	2.2	23	82	6	59	1	13	1	82	0.85
1590687--1590742	6	9.0	6	78	18	53	1	16	1	80	0.88
1590686--1590759	16	5.0	14	72	22	62	1	17	1	79	0.87
1590687--1590787	44	2.3	44	78	8	98	1	17	3	76	1.04
1590753--1590796	22	2.0	22	95	0	79	4	15	13	65	1.41
1597575--1597613	3	12.7	3	89	10	53	30	0	0	69	0.89
1597576--1597609	11	3.1	11	91	8	52	32	0	0	67	0.91
1597575--1597618	14	3.2	14	90	9	65	29	0	0	70	0.88
1597617--1597694	3	26.0	3	80	14	90	60	0	0	39	0.97
1606310--1606350	21	2.0	21	95	0	73	43	14	24	17	1.86
1609782--1609841	31	1.9	31	96	0	111	38	13	25	23	1.91
1613978--1614130	81	1.9	81	98	0	297	28	16	18	36	1.93
1625134--1625169	13	2.5	15	82	17	58	44	5	22	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1626299--1626337	12	3.2	12	89	10	53	35	15	7	41	1.76
1626423--1626487	17	3.6	17	71	15	58	24	30	24	20	1.98
1626440--1626508	21	3.5	21	70	22	67	21	26	27	24	1.99
1626421--1626516	38	2.5	38	93	0	165	22	28	23	25	2.00
1629199--1629264	30	2.2	29	78	10	71	37	18	4	39	1.71
1633008--1633200	76	2.7	71	80	11	216	30	1	9	58	1.40
1633009--1633150	76	1.9	76	91	2	232	28	1	11	58	1.41
1633009--1633170	76	2.1	76	87	5	229	29	1	9	58	1.41
1634235--1634280	21	2.1	22	84	11	60	36	0	10	52	1.37
1637366--1637411	2	23.5	2	95	4	85	50	0	0	50	1.00
1640234--1640389	78	2.0	78	100	0	312	24	23	20	32	1.98
1649064--1649356	147	2.0	147	96	0	541	32	20	19	26	1.97
1656555--1656589	17	2.1	17	100	0	70	54	0	17	28	1.43
1658083--1658321	83	2.9	83	78	12	238	31	12	21	33	1.91
1658189--1658317	41	3.1	41	66	24	99	28	11	21	37	1.89
1658189--1658316	42	3.1	42	64	20	97	28	11	21	38	1.89
1658303--1658436	41	3.3	41	85	5	184	24	17	19	38	1.92
1659521--1659550	2	15.0	2	92	0	51	46	0	3	50	1.18
1659573--1659962	154	2.5	157	80	10	423	42	6	7	42	1.60
1659977--1660018	2	21.0	2	100	0	84	50	0	0	50	1.00
1659976--1660034	8	6.4	9	83	16	61	52	1	1	44	1.21
1660327--1660396	3	22.3	3	77	8	59	44	1	0	54	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1661579--1661613	11	3.1	11	91	4	52	31	2	0	65	1.07
1661621--1661658	2	19.0	2	94	0	67	52	0	0	47	1.00
1662080--1662110	2	15.5	2	93	0	53	48	3	0	48	1.17
1662552--1662827	76	3.7	76	91	0	430	31	22	19	26	1.97
1663514--1663573	22	2.7	22	89	0	93	36	11	16	35	1.85
1663951--1664095	54	2.7	53	88	7	204	22	24	14	38	1.91
1665002--1665202	75	2.7	74	87	3	269	34	19	13	31	1.91
1668591--1668629	7	5.6	7	100	0	78	0	25	0	74	0.82
1668591--1668638	21	2.2	22	92	3	80	0	25	0	75	0.81
1673878--1673928	2	25.5	2	100	0	102	49	0	0	50	1.00
1673951--1674332	145	2.5	148	77	15	349	43	7	7	41	1.63
1674360--1674397	2	19.0	2	100	0	76	50	0	0	50	1.00
1675833--1675873	16	2.6	16	92	0	64	17	14	39	29	1.89
1675944--1676018	3	24.3	3	83	5	96	58	0	1	40	1.06
1675936--1676016	28	3.1	26	81	12	94	55	0	2	41	1.13
1678066--1678345	43	6.5	43	77	10	205	27	24	15	33	1.95
1680297--1680710	58	7.1	58	78	7	378	35	8	12	43	1.74
1680297--1680708	171	2.4	173	83	8	473	35	8	12	42	1.74
1680783--1681050	39	6.8	39	74	10	179	36	8	12	42	1.74
1680803--1681050	78	3.2	76	72	15	218	34	8	12	44	1.73
1681072--1681206	38	3.5	39	87	6	177	41	4	12	41	1.63
1686537--1686607	2	35.5	2	100	0	142	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1690441--1690523	23	3.7	23	86	1	105	21	21	26	30	1.99
1693598--1693630	14	2.3	15	89	5	50	72	0	6	21	1.05
1698828--1698907	35	2.3	35	93	2	135	30	3	11	55	1.53
1704824--1704891	25	2.7	25	84	6	75	27	35	0	36	1.58
1704829--1704923	32	3.2	32	68	25	89	28	33	0	37	1.58
1704838--1704891	25	2.2	25	89	0	81	25	35	0	38	1.57
1705643--1705685	18	2.5	17	76	3	50	27	9	25	37	1.87
1712004--1712052	20	2.6	19	87	12	75	57	0	0	42	0.99
1712624--1712668	21	2.1	21	95	0	81	46	17	6	28	1.73
1715604--1716324	229	3.1	229	96	1	1320	45	7	7	39	1.62

Tables:   1   2   3   4   5   6   7   8   9