genome.fa.s1736.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001736.1 Hibiscus syriacus cultivar Beakdansim tig00003507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1778036

Tables:   1   2   3   4   5   6   7   8   9   

This is table  5  of  9  ( 999 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
805256--805376	42	2.9	40	79	9	125	30	27	21	20	1.98
805600--805626	14	1.9	14	100	0	54	40	22	0	37	1.54
805983--806067	29	2.9	29	100	0	170	21	16	14	48	1.81
808123--808171	23	2.1	23	85	7	64	28	4	12	55	1.55
815058--815101	20	2.2	20	92	4	72	15	20	0	63	1.31
815066--815108	19	2.2	20	87	4	61	18	16	0	65	1.28
818351--818399	23	2.1	23	85	7	64	28	2	10	59	1.41
822020--822074	21	2.6	21	82	5	67	38	20	14	27	1.91
822366--822391	11	2.4	11	100	0	52	50	7	7	34	1.60
823173--823216	20	2.2	20	87	0	61	18	18	34	29	1.94
825017--825167	29	5.3	29	76	9	123	40	23	7	29	1.81
825029--825191	83	2.0	84	85	3	222	41	20	7	30	1.80
825207--825248	18	2.3	18	100	0	84	9	23	50	16	1.75
825197--825240	23	2.0	22	90	4	70	11	22	47	18	1.80
832439--832503	18	3.7	18	87	2	96	15	21	44	18	1.86
832440--832515	36	2.1	35	80	2	80	18	23	39	18	1.92
834059--834086	13	2.2	13	100	0	56	53	0	17	28	1.44
835624--835706	2	41.5	2	100	0	166	50	0	0	49	1.00
841742--842095	41	8.7	41	74	8	276	30	18	17	33	1.94
844292--844316	2	12.5	2	100	0	50	52	0	0	48	1.00
845774--845836	3	22.0	3	81	15	80	66	0	0	33	0.92
845776--845836	26	2.4	26	86	8	81	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
845774--845836	8	7.3	9	85	10	80	66	0	0	33	0.92
845774--845829	29	1.9	29	89	7	87	64	0	0	35	0.94
845775--845836	20	3.3	19	76	15	74	67	0	0	32	0.91
845774--845836	23	2.9	22	82	15	85	66	0	0	33	0.92
845952--846653	45	15.8	45	91	2	1096	33	18	23	24	1.97
846216--846289	25	3.2	25	60	25	61	35	17	24	22	1.95
847724--847851	54	2.4	54	85	5	170	21	21	15	41	1.90
857305--857350	2	23.5	2	95	4	85	50	0	0	50	1.00
861831--861890	23	2.6	23	81	5	59	40	5	16	38	1.71
861934--862000	23	2.9	23	90	0	107	40	8	16	34	1.80
861850--862076	110	2.1	110	90	1	357	42	7	14	35	1.75
862028--862076	23	2.1	23	84	0	62	36	8	18	36	1.81
861954--862113	87	1.8	88	85	4	225	41	8	12	37	1.74
862470--862951	111	4.3	111	88	3	659	45	10	11	32	1.75
863514--863665	70	2.2	70	91	0	250	48	10	12	28	1.74
865582--865628	3	16.0	3	86	4	69	36	2	0	61	1.08
872057--872106	23	2.2	22	85	3	64	50	14	18	18	1.79
877387--877757	184	2.0	184	100	0	742	33	10	23	31	1.89
880456--880488	17	1.9	17	93	0	57	39	18	0	42	1.50
883890--883923	17	1.9	17	88	5	50	23	5	0	70	1.09
883959--884022	3	21.7	3	81	15	71	28	1	1	68	1.07
883983--884019	19	1.9	19	100	0	74	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
883943--884022	21	3.8	21	79	14	94	30	2	1	66	1.13
884096--884155	18	3.3	19	84	9	72	15	8	0	76	1.00
884110--884155	23	2.0	23	83	8	58	15	6	0	78	0.95
886113--886348	60	3.9	60	84	1	303	23	17	19	39	1.92
887489--887534	20	2.2	21	81	14	51	47	4	2	45	1.34
892146--892175	2	15.0	2	100	0	60	50	0	0	50	1.00
893618--893673	26	2.2	26	93	0	94	19	21	17	41	1.91
895303--895385	31	2.7	32	84	3	107	22	19	21	36	1.95
898889--898914	2	13.0	2	100	0	52	50	0	0	50	1.00
900013--900037	7	3.6	7	100	0	50	24	0	0	76	0.80
900010--900060	24	2.1	24	82	7	59	19	0	5	74	1.02
900282--900306	2	12.5	2	100	0	50	52	0	0	48	1.00
902965--903000	10	3.7	10	92	3	56	11	25	30	33	1.90
903050--903087	17	2.2	17	95	0	67	15	47	23	13	1.81
910293--910349	19	3.0	20	85	10	68	21	28	26	24	1.99
910320--910384	19	3.3	19	80	6	58	16	41	26	15	1.88
910353--910390	17	2.2	17	95	0	67	15	47	23	13	1.81
919522--919613	21	4.3	20	81	14	55	25	1	2	71	1.03
919537--919614	6	12.3	6	89	5	75	26	0	0	73	0.84
919549--919618	3	22.7	3	85	5	95	28	0	0	71	0.86
919542--919618	25	3.3	25	82	14	94	28	0	0	71	0.86
920805--920876	35	2.1	34	84	7	92	31	1	2	63	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
921030--921092	33	2.0	33	84	6	85	41	0	1	57	1.08
927523--927597	24	3.0	25	71	11	64	48	2	0	49	1.15
927567--927648	35	2.4	34	84	9	98	57	2	0	40	1.12
928175--928704	107	5.0	107	96	1	969	29	11	21	37	1.89
934026--934065	2	21.0	2	90	10	66	50	0	0	50	1.00
934027--934067	13	3.2	13	89	10	66	48	0	0	51	1.00
934025--934065	15	2.7	15	92	0	73	51	0	0	48	1.00
934026--934065	17	2.4	17	95	0	71	50	0	0	50	1.00
936599--936672	37	2.0	37	86	5	105	20	16	21	41	1.90
937069--937180	43	2.6	43	86	0	161	21	17	33	27	1.96
936777--937696	335	2.7	335	92	0	1491	23	19	24	32	1.97
937406--937515	43	2.6	42	88	4	157	20	17	32	29	1.96
937672--937791	43	2.8	43	89	2	179	20	17	31	30	1.95
937400--937906	277	1.8	277	94	0	897	21	19	25	32	1.97
938067--938155	32	2.8	32	84	0	97	30	24	12	32	1.92
939173--939229	9	6.1	9	78	8	51	0	15	7	77	0.98
944992--945030	2	19.5	2	100	0	78	51	0	0	48	1.00
945147--945176	2	15.0	2	100	0	60	50	0	0	50	1.00
945240--945269	2	15.0	2	100	0	60	50	0	0	50	1.00
947344--947394	3	16.7	3	83	4	66	62	0	1	35	1.06
962472--962932	105	4.4	105	91	0	708	23	21	17	37	1.94
963814--963914	42	2.4	43	85	3	125	38	16	17	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
963989--964142	52	2.9	51	76	8	121	44	14	7	32	1.74
964052--964179	51	2.5	52	83	2	150	41	15	9	33	1.79
964416--964566	34	4.4	35	73	18	120	37	11	21	29	1.89
964414--964571	66	2.3	68	86	8	207	36	11	21	30	1.89
964657--964762	37	2.9	37	92	0	176	42	9	18	29	1.82
968961--968985	3	8.3	3	100	0	50	32	0	0	68	0.90
971182--971256	37	2.0	36	82	14	91	53	5	0	41	1.24
974423--974458	18	2.0	18	88	0	54	30	19	8	41	1.81
977472--977515	23	1.9	23	95	0	79	11	27	9	52	1.67
984466--984513	18	2.7	18	77	9	53	43	0	2	54	1.12
993181--993231	2	25.5	2	100	0	102	49	0	0	50	1.00
1001471--1001517	21	2.2	21	96	0	85	27	31	19	21	1.97
1001532--1002021	82	6.0	81	81	10	518	21	19	23	35	1.96
1001557--1002021	103	4.5	103	79	9	529	21	19	23	35	1.95
1001532--1002021	124	4.0	122	81	8	507	21	19	23	35	1.96
1005806--1005891	24	3.6	23	82	6	100	19	16	16	47	1.82
1005827--1005896	12	5.8	12	78	6	70	15	15	18	50	1.79
1005790--1005894	48	2.2	48	83	6	124	19	18	15	47	1.83
1005807--1005898	48	1.9	48	88	4	141	18	16	16	48	1.81
1005827--1005898	24	3.0	24	89	0	117	16	15	18	50	1.79
1010215--1010284	12	5.8	12	71	6	52	18	15	15	50	1.79
1010178--1010282	48	2.2	48	81	6	115	20	17	15	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010218--1010286	24	2.9	24	82	0	93	20	14	14	50	1.77
1020109--1020156	20	2.5	19	83	10	53	31	14	4	50	1.62
1029762--1029957	29	6.8	28	87	6	243	47	11	4	36	1.58
1029745--1029954	87	2.4	86	89	6	309	47	12	4	35	1.62
1036820--1036852	2	16.5	2	93	0	57	0	3	48	48	1.17
1037566--1037719	58	2.7	58	84	6	199	46	12	4	36	1.62
1037583--1037724	29	4.9	29	88	1	187	46	11	4	36	1.63
1037727--1037756	9	3.3	9	95	0	51	16	30	40	13	1.87
1045111--1045147	12	2.9	13	77	22	51	32	21	2	43	1.67
1046212--1046264	18	2.9	18	94	0	88	26	32	20	20	1.98

Tables:   1   2   3   4   5   6   7   8   9