Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001840.1 Hibiscus syriacus cultivar Beakdansim tig00003725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2412736

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1360 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2295887--2295927
3
13.0
3
90
10
64
34
2
0
63
1.08
2295889--2295927
16
2.4
16
91
0
69
35
2
0
61
1.10
2301774--2301848
31
2.4
31
93
0
123
45
9
14
30
1.77
2308904--2308964
23
2.7
23
84
0
86
26
24
26
22
2.00
2313825--2313884
30
2.0
30
96
0
111
26
25
10
38
1.87
2315906--2315950
23
2.0
23
86
0
63
33
26
22
17
1.96
2315916--2315974
23
2.6
23
86
0
82
28
27
25
18
1.98
2316615--2316776
63
2.5
64
84
4
168
26
19
20
33
1.97
2316656--2316776
64
1.9
63
89
1
188
26
18
19
35
1.95
2318856--2318927
20
3.7
20
92
3
103
19
27
31
20
1.97
2319302--2319331
4
7.5
4
92
0
51
30
0
20
50
1.49
2332586--2332761
41
4.3
41
74
11
119
31
18
18
31
1.95
2332623--2332864
82
2.9
81
82
3
270
31
18
19
30
1.95
2332623--2332929
83
3.7
81
80
6
296
31
18
18
31
1.95
2334899--2334943
19
2.4
18
82
13
56
46
4
6
42
1.50
2334904--2334945
19
2.2
19
86
4
57
50
4
7
38
1.51
2344615--2344645
3
10.3
3
100
0
62
32
0
0
67
0.91
2352615--2352785
47
3.8
46
81
4
197
29
32
15
22
1.95
2352614--2352787
93
1.9
89
84
6
233
28
33
16
21
1.95
2352982--2353021
3
13.3
3
89
10
64
35
0
0
65
0.93
2355972--2356023
19
2.7
19
90
0
86
21
30
19
28
1.97
2359716--2359740
12
2.1
12
100
0
50
36
8
32
24
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2363770--2363827
28
2.0
28
80
9
64
20
3
18
56
1.56
2364489--2364696
65
3.2
63
79
12
226
31
24
17
26
1.97
2364537--2364716
65
2.8
64
80
15
201
30
24
16
28
1.97
2369891--2369923
14
2.5
13
90
9
50
24
0
27
48
1.51
2370522--2370645
41
3.1
41
61
28
95
32
18
9
39
1.83
2374743--2374781
16
2.4
16
82
0
51
17
28
23
30
1.97
2379491--2379561
33
2.2
33
82
14
85
50
2
1
45
1.25
2380934--2380971
11
3.2
12
85
14
53
63
0
0
36
0.95
2381166--2381306
36
3.9
36
95
2
248
17
18
19
44
1.87
2391694--2391869
90
1.9
90
91
3
291
37
10
7
44
1.66
2391831--2391900
22
3.3
21
70
16
63
51
2
2
42
1.31
2398464--2398641
90
2.0
90
92
3
295
37
10
7
44
1.67
2399164--2399216
3
17.7
3
79
14
56
37
0
0
62
0.96
2399161--2399214
28
2.0
27
86
10
76
38
0
0
61
0.96
2399167--2399214
10
4.9
10
82
12
64
37
0
0
62
0.95
2404681--2404712
15
2.1
15
94
0
55
25
18
9
46
1.79
2412014--2412068
21
2.5
21
88
5
74
80
0
18
1
0.81
2412418--2412466
19
2.8
18
81
9
57
38
6
6
48
1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!