genome.fa.s1840.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001840.1 Hibiscus syriacus cultivar Beakdansim tig00003725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2412736

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  5  of  12  ( 1360 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
803114--803156	21	2.0	21	81	0	50	30	30	25	13	1.94
803688--804004	150	2.1	150	96	1	582	25	17	22	34	1.96
803972--804016	23	2.0	23	86	0	63	20	26	26	26	1.99
809553--809595	7	5.7	7	81	10	50	2	39	0	58	1.11
810620--810922	149	2.1	148	93	3	515	26	17	22	34	1.95
810898--810942	23	2.0	23	81	0	54	22	26	24	26	2.00
815701--815906	63	3.3	62	81	10	222	31	24	18	25	1.98
815751--815925	63	2.8	62	81	10	187	29	25	19	25	1.98
820797--820831	16	2.2	16	94	0	61	34	22	28	14	1.93
823702--823781	38	2.1	38	90	4	126	12	10	40	37	1.77
825973--826047	37	2.0	37	87	5	107	46	1	4	48	1.29
832156--832181	3	8.7	3	100	0	52	0	0	30	69	0.89
840916--840960	22	2.0	22	83	8	56	48	11	6	33	1.65
841636--841694	31	2.0	29	86	6	82	25	18	8	47	1.77
841866--841909	15	2.7	17	79	13	56	40	18	0	40	1.50
845186--845235	23	2.1	24	88	7	75	36	24	16	24	1.94
845931--846011	24	3.5	24	85	6	107	25	19	18	35	1.95
849191--849240	23	2.1	24	88	7	75	36	24	16	24	1.94
854348--854408	23	2.7	23	81	0	68	19	21	26	32	1.97
855072--855113	21	2.0	21	95	0	75	28	16	28	26	1.97
855179--855229	19	2.7	19	93	0	93	31	17	11	39	1.86
857293--857330	14	2.6	14	95	4	67	71	5	2	21	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870416--870453	17	2.2	17	95	0	67	36	10	31	21	1.87
870772--870809	14	2.6	14	91	4	58	73	5	2	18	1.14
870722--870833	53	2.0	58	81	11	137	70	3	10	15	1.28
874100--874217	24	5.0	24	83	5	150	25	16	19	38	1.92
879033--879150	24	5.0	24	85	5	150	27	13	19	39	1.89
879045--879164	48	2.5	48	84	2	152	26	11	20	41	1.86
880120--880229	54	2.1	53	83	8	134	63	0	7	28	1.27
886213--886262	21	2.4	20	83	12	57	46	8	10	36	1.67
887250--887319	34	2.1	34	94	0	122	30	11	24	34	1.90
888476--888800	166	2.0	166	83	2	411	35	12	12	40	1.79
891431--891467	18	2.1	18	100	0	74	24	10	16	48	1.77
896990--897033	17	2.5	18	92	3	72	20	9	0	70	1.14
899054--899166	12	9.4	12	69	7	68	54	15	10	19	1.69
899052--899178	24	5.3	24	83	4	141	54	14	10	20	1.69
903374--903508	48	2.8	48	84	2	164	52	16	10	20	1.72
903376--903494	24	5.0	24	80	0	148	52	17	9	21	1.72
908086--908245	84	1.9	85	93	2	277	41	10	15	33	1.80
909697--909735	3	13.0	3	83	0	51	25	33	5	35	1.78
909698--909752	12	4.8	12	78	13	53	21	32	7	38	1.81
911244--912593	199	6.8	200	93	1	2287	30	18	14	35	1.91
911244--912593	596	2.3	596	93	1	2333	30	18	14	35	1.91
913189--913231	19	2.4	17	78	14	50	53	11	2	32	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
913200--913248	19	2.6	19	96	0	89	55	10	2	32	1.45
913500--913562	19	3.2	19	82	8	81	15	30	11	42	1.82
913512--913563	21	2.6	20	88	8	79	13	30	9	46	1.75
916841--916877	15	2.5	15	100	0	74	32	21	21	24	1.98
919260--919297	16	2.4	16	91	4	60	36	13	18	31	1.89
926763--926799	2	19.0	2	94	5	67	48	0	0	51	1.00
927477--927506	15	1.9	16	93	6	53	36	0	6	56	1.26
927462--927522	20	3.3	19	71	21	58	47	1	4	45	1.34
928234--928323	41	2.3	40	83	9	105	66	0	11	22	1.22
929033--929089	2	30.5	2	86	13	86	52	0	0	47	1.00
929025--929098	22	3.4	22	83	12	100	52	0	1	45	1.09
929366--930901	5	313.6	5	87	10	2237	58	20	0	20	1.39
931733--931787	22	2.7	21	86	10	78	38	12	18	30	1.88
932126--932569	55	8.0	55	88	1	611	33	12	18	35	1.88
939150--939586	55	8.0	55	86	4	584	35	11	17	35	1.87
939161--939594	163	2.6	165	89	4	637	35	11	17	35	1.86
939150--939586	218	2.0	219	89	3	666	35	11	17	35	1.87
940241--940274	2	17.5	2	93	6	61	50	0	0	50	1.00
940264--940545	37	7.6	36	79	8	271	43	11	2	42	1.55
940845--941023	81	2.2	81	90	0	277	23	15	24	36	1.93
948075--948154	30	2.7	30	96	1	144	35	7	16	41	1.76
948219--948284	19	3.5	19	89	0	87	39	9	13	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
949600--949659	29	2.0	31	90	6	97	35	6	16	41	1.75
949733--949790	19	3.0	19	89	2	80	39	13	13	32	1.85
949897--949935	20	2.0	20	95	5	71	25	15	30	28	1.96
950219--950288	34	2.1	32	86	5	95	31	14	31	22	1.94
955061--955090	15	1.9	16	93	6	53	60	0	3	36	1.14
955840--955872	15	2.1	16	88	5	50	24	0	18	57	1.40
956541--956582	21	2.0	21	100	0	84	19	33	19	28	1.96
957791--957828	2	19.0	2	100	0	76	50	0	0	50	1.00
959221--959290	31	2.3	31	100	0	140	37	11	7	44	1.68
960336--960398	16	3.9	16	79	18	69	58	3	0	38	1.14
960832--960890	23	2.7	22	87	10	68	57	10	8	23	1.59
960846--960890	23	2.0	23	95	4	83	57	8	8	24	1.57
967325--967349	11	2.3	11	100	0	50	36	0	0	64	0.94
967439--967469	15	2.1	15	93	0	53	45	0	0	54	0.99
976023--976069	21	2.2	22	88	3	69	14	17	0	68	1.22
976032--976077	21	2.2	21	80	3	58	17	15	0	67	1.24
976013--976096	27	3.2	26	75	13	82	14	17	0	67	1.22
983565--983641	31	2.5	31	78	2	84	49	6	12	31	1.67
986417--986493	37	2.0	39	82	5	95	28	0	6	64	1.18
987075--987126	25	2.2	25	82	6	63	51	3	5	38	1.44
989727--989758	3	11.0	3	93	6	57	65	0	0	34	0.93
989729--989762	14	2.5	14	95	4	61	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
989727--989762	17	2.2	16	95	5	63	66	0	0	33	0.92
989949--990275	133	2.4	134	87	2	460	24	15	31	28	1.96
990320--990399	28	2.9	28	83	3	90	42	16	17	23	1.88
990421--990593	66	2.7	64	77	7	172	38	14	20	26	1.91
990867--990920	27	2.0	28	89	10	85	46	16	9	27	1.78
990924--990963	21	1.9	21	84	0	53	45	15	17	22	1.85
990878--991058	67	2.8	65	78	9	201	43	14	13	28	1.84
991012--991073	30	2.1	30	93	3	108	38	14	12	33	1.84
990984--991356	129	2.9	127	70	21	296	42	13	14	29	1.84
991143--991248	37	3.1	37	58	23	86	42	13	14	30	1.83
990884--991206	156	2.1	158	85	4	438	40	13	14	31	1.85
991042--991269	64	3.6	64	89	4	363	38	14	14	32	1.86
991237--991336	29	3.4	29	83	9	132	46	14	11	29	1.78
994894--994956	20	2.9	21	79	9	65	15	25	34	23	1.95
998765--998806	19	2.2	19	83	8	50	38	4	2	54	1.34
1000925--1000985	15	4.4	14	73	22	58	3	14	4	77	1.07
1000908--1001009	42	2.4	42	82	12	111	3	15	6	73	1.19
1001616--1001657	20	2.1	20	86	0	57	38	9	23	28	1.86
1002853--1003003	75	2.0	74	93	3	259	21	25	15	37	1.92
1004836--1004989	76	2.0	76	97	0	290	20	25	16	37	1.93
1019071--1019118	2	24.0	2	91	0	78	45	0	4	50	1.21
1026388--1026566	97	1.9	96	80	3	216	37	24	8	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1031812--1031861	20	2.5	20	90	0	73	44	20	18	18	1.88
1032616--1032654	14	2.8	14	88	0	60	25	12	25	35	1.92
1032666--1032712	20	2.3	20	88	0	67	19	19	21	40	1.92
1032790--1032850	20	3.0	20	75	0	59	24	14	14	45	1.83
1032799--1032859	20	3.1	20	73	2	52	27	14	11	45	1.80
1032789--1032880	40	2.3	40	83	7	116	25	15	16	43	1.86
1032852--1032921	20	3.5	20	83	9	74	17	17	22	42	1.88
1035251--1035284	15	2.3	15	89	0	50	67	2	0	29	1.05
1039424--1039584	81	2.0	81	87	2	234	37	11	32	18	1.87
1040857--1041063	107	1.9	108	89	4	321	36	7	10	45	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12