genome.fa.s1978.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001978.1 Hibiscus syriacus cultivar Beakdansim tig00004013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2594977

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1125 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2436403--2436471	14	5.3	14	73	18	51	56	0	1	42	1.08
2439397--2439502	39	2.7	39	89	0	158	30	9	13	47	1.74
2442264--2442390	63	2.0	63	100	0	254	35	18	6	39	1.77
2442647--2442702	16	3.4	16	74	13	60	48	14	3	33	1.61
2442638--2442702	33	2.0	33	93	0	112	49	13	3	33	1.58
2449081--2449106	3	8.7	3	100	0	52	30	0	0	69	0.89
2456420--2456458	20	2.0	20	94	0	69	33	23	0	43	1.54
2458979--2459016	16	2.4	16	86	4	51	52	0	5	42	1.24
2474734--2474776	23	1.9	22	95	4	77	32	0	9	58	1.30
2474942--2475073	61	2.2	61	80	0	156	30	18	25	25	1.98
2483858--2484057	100	2.0	100	100	0	400	34	16	12	38	1.85
2494804--2494867	17	3.8	17	73	8	67	15	20	9	54	1.68
2506115--2506189	34	2.2	34	81	9	91	17	18	9	54	1.69
2507161--2507198	19	2.0	19	94	0	67	47	7	0	44	1.32
2511186--2511223	20	1.9	20	94	0	67	39	21	7	31	1.82
2519455--2519542	29	3.0	29	100	0	176	23	13	13	48	1.78
2520837--2521023	90	2.1	87	84	7	243	26	14	5	52	1.64
2522029--2522066	19	2.0	19	89	0	58	47	10	0	42	1.38
2527585--2527628	22	1.9	24	86	9	65	54	6	0	38	1.27
2528430--2528472	22	2.0	22	95	0	77	41	6	4	46	1.51
2533995--2534045	24	2.2	24	89	3	77	43	23	15	17	1.88
2535293--2535462	87	2.0	86	85	8	229	43	12	14	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2539850--2539916	33	2.0	33	97	0	125	41	29	13	14	1.85
2540978--2541014	18	2.1	18	100	0	74	40	10	27	21	1.86
2542033--2542066	18	1.9	18	88	5	52	26	32	26	14	1.95
2543593--2543632	2	20.5	2	92	5	64	45	0	0	55	0.99
2543652--2543707	27	2.2	25	84	12	69	17	7	1	73	1.15
2543673--2543719	22	2.0	22	84	8	58	23	6	0	70	1.10
2543652--2543720	27	2.6	27	80	13	65	21	7	1	69	1.21
2545007--2545057	24	2.2	23	80	19	54	21	7	0	70	1.12
2545120--2545165	21	2.1	21	84	8	56	23	6	0	69	1.11
2553252--2553283	16	2.0	16	100	0	64	50	6	18	25	1.70
2558457--2558497	2	20.5	2	100	0	82	48	0	0	51	1.00
2558513--2558573	20	3.2	19	77	11	54	24	8	0	67	1.18
2558602--2558636	2	17.5	2	100	0	70	48	0	0	51	1.00
2565541--2565570	15	2.0	15	93	0	51	76	0	0	23	0.78
2565937--2566884	239	3.9	239	93	0	1572	34	17	14	33	1.90
2565937--2566884	479	2.0	481	93	0	1621	34	17	14	33	1.90
2568700--2568782	28	3.0	28	91	7	125	25	3	16	54	1.59
2577188--2577212	2	12.5	2	100	0	50	52	0	0	48	1.00
2577375--2577432	12	4.8	12	80	0	62	53	18	13	13	1.73
2582129--2582212	12	7.0	12	71	5	62	53	19	13	14	1.72
2582129--2582212	24	3.5	24	86	0	105	53	19	13	14	1.72
2587061--2587100	21	1.9	21	89	0	62	60	20	2	17	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2591017--2591042	11	2.4	11	100	0	52	57	15	7	19	1.62

Tables:   1   2   3   4   5   6   7   8   9   10

The End!