genome.fa.s3744.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003744.1 Hibiscus syriacus cultivar Beakdansim tig00008013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2457414

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  1  of  11  ( 1317 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
912--951	21	1.9	21	85	10	55	45	0	0	55	0.99
929--979	26	2.0	26	84	7	68	47	1	0	50	1.12
13370--13403	16	2.0	18	88	11	54	52	0	0	47	1.00
23406--23453	2	24.5	2	95	4	89	50	0	0	50	1.00
24100--24162	24	2.6	24	97	0	117	52	6	3	38	1.43
25093--25143	24	2.3	22	87	12	70	41	9	5	43	1.62
25101--25149	24	2.0	24	100	0	98	36	12	8	42	1.72
32793--32844	9	6.1	9	76	13	56	63	1	0	34	1.06
32795--32852	16	3.6	16	88	4	80	63	1	0	34	1.04
36539--36596	21	2.8	21	89	0	80	22	0	3	74	0.97
36549--36592	13	3.8	12	82	17	58	25	0	0	75	0.81
37032--37082	21	2.4	21	77	6	59	23	25	17	33	1.96
37072--37123	20	2.5	21	87	3	70	40	17	21	21	1.91
37112--37226	20	5.7	20	84	6	133	32	26	18	22	1.97
37110--37226	41	2.9	40	88	3	155	33	26	17	22	1.96
37504--37572	21	3.3	20	74	6	66	24	40	15	18	1.90
37494--37584	41	2.2	42	88	2	139	21	41	15	20	1.89
38993--39031	14	2.8	14	84	0	51	35	0	17	46	1.49
39171--39235	19	3.7	19	80	15	86	46	16	21	15	1.84
48840--48915	20	3.8	20	96	0	134	14	22	23	39	1.91
48828--48934	40	3.0	34	78	15	115	14	24	23	38	1.91
49442--49529	20	4.4	20	97	0	149	25	20	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49497--49574	41	1.9	41	83	0	102	21	15	23	39	1.91
49605--49674	21	3.3	21	86	4	97	37	12	25	24	1.91
49840--49884	16	3.3	13	80	19	56	71	0	0	28	0.87
49848--49878	16	1.9	16	100	0	62	70	0	0	29	0.87
50820--50907	33	2.7	33	83	0	113	5	38	14	40	1.70
53154--53184	15	2.1	14	94	5	53	58	6	0	35	1.24
61153--61183	15	2.1	15	100	0	62	41	25	12	19	1.87
62275--62306	2	16.0	2	100	0	64	50	0	0	50	1.00
64756--64805	25	2.0	25	88	0	73	46	4	8	42	1.52
68109--68210	34	2.9	35	91	4	161	44	12	13	29	1.81
68110--68244	37	3.7	37	86	2	150	42	11	13	31	1.80
68854--68906	22	2.3	23	78	18	58	28	5	0	66	1.15
68784--68940	74	2.1	74	80	13	171	25	8	3	63	1.38
68924--69004	4	19.2	4	76	20	53	20	1	3	74	1.05
68924--69002	5	16.4	5	78	13	53	20	1	3	74	1.04
71353--71392	8	5.0	8	90	0	53	10	20	12	57	1.63
72143--72381	119	2.0	119	100	0	478	35	21	13	29	1.91
72618--72651	16	2.1	16	89	10	52	76	5	14	2	1.09
72624--72692	8	9.1	7	75	17	59	76	5	15	1	1.04
73161--73320	84	1.9	84	89	0	248	31	2	21	44	1.66
74300--74872	285	2.0	287	94	0	1006	44	13	7	33	1.73
76586--76642	23	2.4	24	75	13	64	59	8	7	24	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77765--77815	23	2.2	23	100	0	102	52	23	5	17	1.66
81555--81728	85	2.0	85	97	2	332	46	9	11	32	1.72
82619--82643	3	8.3	3	100	0	50	68	0	0	32	0.90
84663--85092	149	2.9	149	96	0	790	34	13	15	36	1.87
85211--85265	23	2.4	23	87	0	83	16	21	12	49	1.79
86519--86572	22	2.5	22	93	0	90	38	16	11	33	1.84
97084--97420	59	5.6	58	76	12	252	32	9	16	41	1.81
97520--97614	42	2.3	41	80	5	102	29	20	17	32	1.96
98107--98549	116	3.8	115	80	3	442	40	15	20	22	1.90
98460--98628	91	1.9	91	92	0	284	42	17	20	20	1.89
98342--98741	207	1.9	207	85	3	554	40	16	21	21	1.91
98539--98799	116	2.3	116	81	2	312	42	16	20	19	1.89
98774--99076	139	2.2	138	83	1	365	39	14	22	23	1.91
107209--107234	2	13.0	2	100	0	52	50	0	0	50	1.00
107660--107718	2	29.5	2	100	0	118	50	0	0	49	1.00
108027--108085	21	2.8	21	94	0	100	23	1	23	50	1.58
108413--108524	37	3.0	37	90	0	179	41	14	13	30	1.84
108461--108524	21	3.3	21	64	20	57	43	14	12	29	1.81
112893--113136	95	2.7	94	81	12	289	30	17	18	33	1.94
114238--115717	84	17.9	83	78	6	1482	31	23	19	25	1.98
114238--115564	249	5.4	248	89	2	1841	30	23	20	25	1.98
114242--115717	165	8.9	166	81	7	1466	31	23	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114238--115717	249	6.0	246	87	4	1714	31	23	19	25	1.98
114444--115701	661	1.9	656	89	1	1955	31	23	19	25	1.98
116889--116985	37	2.6	38	75	15	112	30	1	3	64	1.15
116912--117022	47	2.5	48	77	11	119	27	1	2	68	1.13
116889--116994	35	2.9	34	77	14	113	29	1	2	66	1.17
116862--117002	39	3.8	37	72	17	121	29	2	2	65	1.18
116906--117044	43	3.2	42	74	17	117	23	2	2	71	1.10
116948--117061	45	2.5	45	76	16	110	21	2	1	73	1.05
116904--117063	9	18.9	8	71	19	62	23	2	1	72	1.07
116927--117057	43	3.0	43	76	12	126	23	3	1	71	1.08
117132--117158	4	6.8	4	100	0	54	22	0	0	77	0.76
118626--118655	2	15.0	2	92	0	51	53	0	0	46	1.00
126265--126369	51	2.1	49	80	8	113	22	8	7	60	1.51
131024--131175	39	4.0	39	89	3	211	26	19	18	35	1.95
131020--131378	36	10.1	36	79	10	303	27	20	15	37	1.92
131120--131378	66	3.8	67	84	5	288	27	20	13	38	1.90
131789--133370	132	12.0	132	91	1	2398	28	20	20	30	1.98
133039--133408	45	8.3	45	70	9	204	30	20	20	28	1.98
133120--133548	179	2.4	178	86	1	581	30	20	19	29	1.97
133348--134374	133	7.7	133	88	2	1467	28	20	20	30	1.97
131845--134346	44	56.6	44	68	6	989	28	20	20	30	1.98
135550--135654	51	2.1	49	80	8	113	22	8	7	60	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137966--138004	17	2.2	18	90	4	62	74	12	0	12	1.08
137971--138048	26	3.0	26	73	17	72	70	6	2	20	1.21
138042--138080	19	2.1	19	85	0	51	56	7	2	33	1.41
138223--138256	3	11.3	3	93	0	59	35	29	0	35	1.58
139172--139205	2	17.0	2	100	0	68	50	0	0	50	1.00
139226--139263	20	1.9	20	88	0	58	55	0	5	39	1.23
144433--144539	21	5.0	21	65	13	74	44	13	6	35	1.69
144454--144525	22	3.3	22	69	11	76	45	13	8	31	1.74
144424--144539	43	2.7	43	98	0	223	43	14	6	36	1.70
150855--150888	2	17.5	2	93	6	61	0	50	0	50	1.00
151467--151509	11	3.7	11	79	11	50	62	2	2	32	1.20
153431--153471	21	2.0	21	90	0	64	53	0	4	41	1.22
154490--154595	54	2.0	54	87	3	153	7	32	4	55	1.49
154490--154613	54	2.3	53	83	5	151	8	28	4	59	1.44
156248--156433	94	2.0	94	96	0	345	31	13	23	32	1.93
157437--157505	25	2.8	25	88	2	95	39	21	15	23	1.92
158384--158444	27	2.3	27	97	0	113	16	21	32	29	1.95
158476--158523	19	2.5	19	100	0	96	20	16	31	31	1.95
158965--159003	17	2.3	18	87	12	57	35	0	0	64	0.94
160756--160820	33	2.0	33	82	11	80	18	3	3	75	1.07
160769--160824	22	2.5	22	85	2	58	17	1	1	78	0.92
160776--160824	22	2.2	22	88	3	71	18	0	0	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160776--160843	33	2.1	32	83	8	84	19	1	0	79	0.81
164803--164924	36	3.3	36	70	4	109	28	16	15	39	1.89
164750--164917	72	2.3	74	85	7	225	28	17	14	39	1.88
164933--165312	36	10.4	36	75	12	258	25	20	12	41	1.87
165148--165269	42	3.0	42	81	13	157	22	21	11	45	1.83
165103--165312	78	2.8	74	80	12	275	23	20	13	42	1.87
165308--165428	36	3.3	36	81	4	161	29	19	12	38	1.89
165448--165592	37	4.0	36	84	2	182	23	20	14	42	1.88
165448--165592	73	2.0	73	84	0	191	23	20	14	42	1.88
165648--165739	38	2.5	38	89	6	138	43	18	8	29	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11