genome.fa.s3744.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003744.1 Hibiscus syriacus cultivar Beakdansim tig00008013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2457414

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1317 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2285441--2285466	13	2.0	13	100	0	52	76	7	7	7	1.15
2286079--2286133	22	2.5	22	96	0	101	36	25	12	25	1.91
2286966--2288438	106	14.0	106	90	1	2167	34	24	17	23	1.96
2289169--2289273	37	2.8	37	83	0	138	40	14	12	33	1.83
2289509--2289533	8	3.1	8	100	0	50	28	12	24	36	1.91
2290143--2290192	19	2.6	19	84	12	66	16	4	0	80	0.87
2290156--2290207	15	3.4	15	80	12	52	7	9	0	82	0.84
2290144--2290212	35	2.0	35	83	11	88	11	8	0	79	0.93
2291955--2292008	19	2.8	19	80	11	65	44	18	12	24	1.85
2292561--2292792	118	2.0	119	86	5	328	55	3	10	29	1.52
2296464--2296577	59	1.9	58	84	7	149	30	16	10	42	1.82
2297120--2297181	27	2.4	25	79	12	63	51	1	3	43	1.27
2297824--2297932	31	3.5	31	86	5	157	38	5	12	43	1.66
2301600--2301661	19	3.4	19	74	12	58	69	1	6	22	1.20
2301621--2301667	19	2.5	18	83	16	60	72	0	6	21	1.07
2301715--2301768	28	2.0	27	82	17	67	74	0	3	22	0.98
2301731--2301811	32	2.5	30	79	13	74	72	2	4	19	1.14
2303197--2303473	39	7.4	36	76	14	208	45	6	1	46	1.39
2304078--2304118	21	2.0	21	90	0	64	48	0	7	43	1.30
2318036--2318111	36	2.1	36	85	7	100	47	1	3	47	1.29
2320191--2320242	18	2.9	18	88	2	70	23	17	32	26	1.96
2324297--2324349	18	2.9	18	97	0	97	18	22	33	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2326063--2326096	18	1.9	17	94	5	59	17	17	5	58	1.57
2326846--2326870	12	2.1	12	100	0	50	44	32	16	8	1.76
2331876--2331932	21	2.7	21	97	0	105	22	24	22	29	1.99
2335368--2335442	23	3.3	23	92	3	118	29	28	16	26	1.96
2340363--2340425	23	2.7	24	87	5	92	22	20	20	36	1.95
2342048--2342106	24	2.5	24	85	0	73	22	15	25	37	1.93
2343956--2344005	26	1.9	26	88	8	75	28	2	4	66	1.21
2347917--2348009	41	2.3	43	80	10	97	54	3	0	41	1.16
2347995--2348026	15	2.2	15	94	5	57	50	0	0	50	1.00
2360403--2360450	20	2.4	20	89	0	69	35	20	20	22	1.96
2360630--2360695	22	3.0	22	86	0	96	24	37	15	22	1.92
2361082--2361221	73	1.9	74	91	1	228	12	17	25	45	1.82
2361104--2361205	53	1.9	54	85	2	143	13	16	25	44	1.85
2361031--2361227	93	2.1	93	95	0	349	13	16	23	45	1.83
2361064--2361221	20	8.2	20	83	8	159	13	17	24	44	1.85
2361191--2361234	20	2.2	20	87	0	61	13	13	18	54	1.71
2361055--2361247	93	2.1	93	88	1	280	16	16	22	44	1.86
2361527--2361607	33	2.4	33	89	2	117	13	24	19	41	1.88
2361581--2361663	20	4.2	20	89	3	123	16	19	25	38	1.92
2364113--2364167	24	2.3	24	90	0	83	38	18	16	27	1.92
2364995--2365062	20	3.4	20	100	0	136	25	19	29	26	1.98
2365064--2365214	20	7.6	20	93	0	257	21	19	19	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2365204--2365250	21	2.2	20	85	10	67	36	21	23	19	1.95
2365211--2365251	21	2.0	21	95	0	73	41	17	24	17	1.89
2366979--2367034	26	2.2	26	100	0	112	46	14	14	25	1.82
2367587--2367637	15	3.5	15	75	2	50	21	5	1	70	1.18
2368716--2368778	31	2.1	30	90	3	99	58	6	6	28	1.47
2368720--2368782	13	4.5	13	70	18	54	61	6	4	26	1.40
2369114--2369296	60	3.0	60	71	8	165	43	5	20	30	1.75
2371181--2371263	33	2.5	33	92	0	139	12	26	27	33	1.92
2371346--2371695	174	2.0	174	94	1	621	50	9	10	30	1.67
2374705--2374730	13	2.0	13	100	0	52	53	23	0	23	1.46
2375072--2375110	20	2.0	20	94	0	69	17	43	12	25	1.85
2391065--2391105	2	20.5	2	100	0	82	48	0	0	51	1.00
2391927--2391985	23	2.6	23	86	0	91	16	37	22	23	1.94
2395962--2396042	24	3.4	23	79	1	81	30	20	23	24	1.99
2395968--2396032	24	2.8	23	86	4	94	27	24	26	21	1.99
2396144--2396187	23	1.9	23	85	0	61	29	25	27	18	1.98
2400738--2400808	13	5.6	13	68	18	51	45	4	4	46	1.42
2400774--2400876	26	3.8	26	67	22	61	41	3	7	46	1.51
2400887--2400925	20	2.0	20	85	10	53	38	0	12	48	1.42
2401230--2401258	15	1.9	15	100	0	58	34	0	10	55	1.34
2401250--2401300	24	2.0	25	82	14	61	41	1	11	45	1.52
2401322--2401415	24	4.0	24	83	6	120	46	3	5	44	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2401450--2401493	22	2.0	22	100	0	88	40	4	9	45	1.56
2402872--2402910	19	2.1	19	85	0	51	58	0	5	35	1.20
2404029--2404058	12	2.4	13	88	11	53	30	0	23	46	1.52
2406458--2406536	16	4.6	16	78	17	86	43	11	2	43	1.54
2406437--2406518	22	4.0	22	77	18	104	46	9	2	41	1.50
2406437--2406534	38	2.6	38	100	0	196	45	10	2	41	1.49
2406598--2406648	13	4.1	13	72	10	52	41	3	5	49	1.45
2406650--2406694	21	2.1	22	84	12	58	51	8	2	37	1.46
2407132--2407162	16	1.9	16	93	0	53	41	16	0	41	1.48
2407163--2407214	26	2.1	25	85	7	70	51	5	1	40	1.37
2407191--2407254	20	3.2	20	68	16	60	48	6	4	40	1.49
2407366--2407408	16	2.6	17	81	7	61	69	0	2	27	1.00
2410411--2410441	16	1.9	16	93	0	53	61	9	0	29	1.28
2410451--2410541	33	2.7	33	98	1	173	57	9	3	29	1.47
2410565--2410647	4	21.8	4	71	11	59	1	34	0	63	1.02
2410565--2410647	19	4.4	19	93	3	132	1	34	0	63	1.02
2412120--2412190	24	2.9	24	91	2	97	39	14	18	28	1.89
2412135--2412190	24	2.3	24	100	0	112	37	16	17	28	1.91
2413681--2413706	8	3.2	8	100	0	52	11	0	0	88	0.52
2413667--2413782	56	2.0	57	85	6	155	30	3	5	61	1.34
2413748--2413807	31	1.9	31	89	0	93	35	3	3	58	1.31
2413745--2413811	15	4.6	14	71	14	55	32	2	2	61	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2414061--2414091	16	1.9	16	100	0	62	29	6	12	51	1.65
2416994--2417060	5	13.8	5	75	6	57	71	1	1	25	1.03
2417009--2417060	20	2.6	20	93	0	86	69	1	0	28	0.99
2416998--2417060	25	2.6	25	82	7	76	69	1	1	26	1.06
2417339--2417391	26	2.0	26	96	0	97	24	13	15	47	1.81
2418064--2418106	22	2.0	22	95	0	77	37	25	9	27	1.87
2421066--2421206	70	2.0	70	83	0	174	31	14	26	27	1.95
2434045--2434121	30	2.6	30	72	0	73	33	7	19	38	1.81
2437410--2437441	8	4.0	8	91	0	55	90	0	0	9	0.45
2437409--2437438	15	2.0	15	93	0	51	90	0	0	10	0.47
2441794--2441856	23	2.7	23	92	0	99	38	20	4	36	1.74
2441443--2442499	432	2.5	432	97	1	2018	38	12	7	40	1.72
2442226--2442288	23	2.7	23	92	0	99	38	20	4	36	1.74
2442710--2442794	39	2.2	39	91	2	136	18	12	18	49	1.79
2443042--2443090	24	2.0	25	88	4	73	48	14	4	32	1.62
2443505--2443566	23	2.4	26	74	20	67	40	16	4	38	1.69
2443514--2443567	23	2.3	23	93	0	90	40	16	5	37	1.72
2446013--2446637	183	3.4	183	95	0	1110	33	16	14	36	1.88
2448098--2448176	3	26.3	3	75	0	68	24	34	6	35	1.81
2448098--2448183	12	7.2	12	82	0	91	23	33	6	36	1.82
2448106--2448183	36	2.2	36	88	0	111	21	34	7	35	1.82
2449647--2451117	197	7.5	197	98	1	2826	32	16	15	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2449647--2451117	393	3.7	395	98	0	2830	32	16	15	36	1.90
2449647--2451117	590	2.5	590	98	1	2824	32	16	15	36	1.90
2451242--2451290	19	2.6	19	90	6	73	55	10	4	30	1.52
2453077--2453142	33	2.0	33	90	0	105	22	48	0	28	1.51
2455463--2455505	20	2.3	18	85	14	61	20	16	11	51	1.75
2455468--2455514	20	2.4	19	82	10	67	19	17	10	53	1.72
2455635--2455679	20	2.2	20	92	7	74	17	17	11	53	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!