genome.fa.s3744.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003744.1 Hibiscus syriacus cultivar Beakdansim tig00008013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2457414

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1317 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1816186--1816295	44	2.5	43	82	5	114	44	2	3	49	1.34
1816215--1816283	21	3.2	21	67	15	59	42	1	2	53	1.24
1819809--1820053	42	5.8	43	79	9	245	23	19	5	51	1.68
1819745--1820057	42	7.4	43	75	12	229	25	17	5	51	1.66
1829539--1829610	34	2.1	35	97	2	137	34	8	19	37	1.82
1835238--1835392	77	2.0	79	87	5	226	36	12	9	41	1.75
1835439--1835500	20	3.0	19	72	20	52	59	1	0	38	1.07
1835979--1836027	22	2.3	22	92	3	82	8	18	28	44	1.78
1842663--1842820	21	7.8	20	72	7	86	38	25	17	18	1.92
1842786--1842941	20	7.8	20	79	7	136	38	26	17	17	1.92
1842787--1842941	40	3.8	40	83	4	195	38	26	18	17	1.92
1843323--1843393	33	2.2	33	92	0	115	11	22	18	47	1.80
1843473--1843576	21	5.4	20	73	15	96	45	19	24	11	1.83
1843473--1843549	21	3.8	20	82	5	100	45	16	24	12	1.83
1843472--1843549	41	1.9	41	97	0	147	44	16	25	12	1.83
1843533--1843589	14	3.7	14	72	20	51	45	22	22	8	1.80
1843525--1843605	33	2.5	33	93	0	135	48	22	20	8	1.77
1843601--1843684	19	4.7	19	80	14	88	10	21	21	46	1.81
1843642--1843698	14	3.7	14	75	20	60	8	24	22	43	1.81
1843623--1843706	33	2.5	33	100	0	168	9	23	20	46	1.80
1845402--1845776	185	2.0	185	98	1	725	22	12	19	45	1.83
1845402--1845776	93	4.1	93	98	1	727	22	12	19	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1845839--1845951	19	6.5	19	74	19	120	46	28	17	7	1.74
1845859--1845951	33	2.8	32	91	4	150	46	27	18	7	1.76
1845839--1845951	52	2.2	51	81	9	131	46	28	17	7	1.74
1845947--1846046	19	5.8	18	74	21	99	11	21	21	47	1.81
1845969--1846025	14	3.7	14	77	20	60	10	21	22	45	1.82
1845952--1846044	33	2.8	33	95	0	168	10	20	21	47	1.80
1845947--1846062	19	6.6	19	70	19	72	12	19	22	45	1.83
1846454--1846540	45	1.9	45	85	0	120	20	41	16	21	1.90
1847976--1848011	13	2.6	14	82	8	56	33	0	22	44	1.53
1848118--1848214	19	5.4	19	83	14	134	45	17	22	14	1.85
1848118--1848233	53	2.2	53	95	3	209	43	18	25	13	1.86
1848223--1848476	19	14.7	19	74	20	245	14	21	18	45	1.85
1848229--1848390	33	4.8	33	73	17	161	14	22	17	45	1.84
1848223--1848448	52	4.3	52	96	1	409	14	22	17	45	1.84
1848223--1848448	103	2.2	103	95	1	407	14	22	17	45	1.84
1848280--1848490	33	6.2	33	77	13	232	13	21	18	46	1.83
1851682--1851891	20	10.4	20	88	2	258	20	17	24	37	1.94
1851682--1851952	40	6.7	40	84	8	291	20	17	24	37	1.93
1851900--1852038	21	6.8	20	76	11	68	21	18	22	37	1.94
1851783--1851934	62	2.5	62	82	10	163	21	17	26	35	1.95
1851920--1852038	21	5.7	21	77	4	98	23	19	21	36	1.95
1851883--1852039	63	2.6	59	78	7	170	22	17	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1852933--1852959	2	13.5	2	100	0	54	51	0	0	48	1.00
1853456--1853480	10	2.5	10	100	0	50	28	0	8	64	1.22
1860596--1860655	31	2.0	30	96	3	111	40	15	15	30	1.87
1866046--1866090	23	2.0	23	100	0	90	8	22	26	42	1.83
1873937--1873965	15	1.9	15	100	0	58	10	0	27	62	1.28
1875122--1875168	24	2.0	24	83	8	60	40	12	10	36	1.78
1878655--1878741	37	2.3	38	75	9	88	19	10	33	36	1.86
1878675--1878756	37	2.2	38	84	4	105	12	9	43	34	1.75
1878979--1879107	42	3.1	41	77	14	131	49	2	7	40	1.44
1879021--1879085	22	3.1	22	65	17	57	50	3	7	38	1.47
1878999--1879123	42	3.0	43	88	6	195	52	2	6	39	1.40
1879921--1880493	283	2.0	292	94	4	1024	30	6	38	24	1.82
1880730--1880850	61	2.0	59	96	3	224	47	4	37	9	1.58
1886034--1886111	30	2.4	31	85	12	104	61	6	2	29	1.34
1889437--1889518	22	3.9	21	80	9	78	45	7	3	43	1.49
1889458--1889526	20	3.3	20	77	15	77	44	7	4	43	1.51
1889445--1889526	42	2.0	42	87	0	119	45	8	3	42	1.52
1889540--1889578	17	2.2	18	90	4	62	43	2	5	48	1.38
1889548--1889585	9	4.3	9	86	6	51	39	2	7	50	1.46
1889573--1889697	25	4.4	31	77	16	112	47	4	4	44	1.40
1889651--1889910	2	128.0	2	70	15	151	45	2	5	47	1.38
1902746--1902787	21	2.0	21	85	0	57	45	4	11	38	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1903059--1903108	24	2.1	24	85	7	66	50	4	0	46	1.20
1903529--1903584	25	2.3	24	90	6	87	53	3	0	42	1.18
1903612--1903657	22	2.1	22	84	15	60	52	2	0	45	1.13
1903689--1903726	10	4.0	10	80	13	53	55	0	0	44	0.99
1903678--1903788	21	5.1	21	73	17	68	61	0	0	38	0.96
1903691--1903725	18	1.9	18	94	0	61	57	0	0	42	0.99
1903747--1903909	27	6.2	26	68	18	95	52	1	0	46	1.13
1903681--1903806	23	5.5	22	72	15	96	59	0	0	39	1.03
1903791--1903906	28	3.9	28	74	11	81	51	0	0	46	1.12
1903847--1903910	19	3.8	16	70	22	58	50	0	1	48	1.10
1903879--1903924	10	4.5	10	78	21	51	58	0	0	41	0.98
1903880--1903936	22	2.6	22	84	10	73	54	0	0	45	0.99
1903887--1903936	21	2.3	21	86	10	66	54	0	0	46	1.00
1904125--1904239	42	2.7	42	94	0	194	46	19	17	17	1.85
1908278--1908530	31	8.2	31	95	0	461	33	15	11	39	1.83
1909040--1909264	64	3.5	64	80	8	210	26	19	21	32	1.97
1912317--1912569	31	8.2	31	93	0	434	33	14	11	40	1.81
1912420--1912503	16	5.4	16	63	21	52	32	14	13	40	1.84
1913132--1913296	64	2.6	64	85	5	210	25	21	21	32	1.98
1930428--1930780	105	3.4	104	88	4	496	22	16	26	34	1.95
1931602--1931749	67	2.2	66	85	5	201	33	10	24	32	1.89
1931719--1931784	35	1.9	35	87	3	98	37	13	22	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1931801--1932105	37	8.9	36	70	14	189	37	13	21	27	1.91
1931702--1932087	101	3.9	101	92	3	620	36	12	21	29	1.90
1932002--1932105	35	2.9	35	91	2	154	37	13	24	25	1.91
1932958--1933006	22	2.2	22	92	0	80	28	14	24	32	1.94
1932970--1933013	22	2.0	22	86	0	61	31	13	22	31	1.93
1936830--1936863	17	2.1	16	94	5	59	67	0	8	23	1.18
1936873--1936924	20	2.7	20	75	3	61	67	1	5	25	1.23
1937445--1937513	34	2.0	34	97	0	129	33	13	11	42	1.80
1942888--1942929	21	2.0	21	100	0	84	38	0	19	42	1.51
1948744--1948783	15	2.5	16	84	12	55	42	0	2	55	1.13
1950823--1950878	22	2.5	22	80	13	69	30	3	0	66	1.09
1950823--1950901	23	3.4	21	77	16	59	29	3	0	67	1.08
1950844--1950913	23	3.1	21	76	21	63	25	2	0	71	1.00
1950823--1950913	45	2.0	44	81	10	105	28	4	0	67	1.10
1950854--1950911	28	2.1	27	81	9	64	27	3	0	68	1.05
1950998--1951054	20	2.9	19	75	14	62	22	8	1	66	1.29
1955557--1955603	16	3.1	15	83	16	62	80	6	12	0	0.88
1955578--1955616	17	2.2	18	86	9	53	82	7	7	2	0.94
1957220--1958495	106	12.0	106	91	0	1899	34	24	18	23	1.96
1959246--1959349	37	2.8	37	86	0	136	42	13	13	30	1.83
1959728--1959920	102	1.9	101	80	7	221	28	5	3	62	1.35
1959973--1960119	16	10.1	14	66	25	65	28	4	1	65	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1960062--1960106	13	3.4	13	82	11	56	26	2	0	71	0.98
1960051--1960122	22	3.3	20	75	19	65	26	2	0	70	1.00
1960307--1960346	19	2.2	19	86	4	55	22	5	0	72	1.04
1961004--1961052	25	2.0	25	88	8	73	46	2	6	44	1.39
1961914--1961961	23	2.1	23	88	0	69	35	6	18	39	1.76
1962190--1962228	20	2.0	20	89	0	60	35	10	7	46	1.67
1962614--1963064	180	2.5	181	90	4	716	27	16	13	42	1.85
1963032--1963068	18	2.1	18	89	0	56	32	13	13	40	1.84
1962976--1963132	68	2.3	68	92	2	260	31	16	10	41	1.82
1962794--1963246	250	1.8	250	91	2	759	27	15	13	43	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11