genome.fa.s3805.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003805.1 Hibiscus syriacus cultivar Beakdansim tig00008145_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2300233

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1239 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2286846--2286908	23	2.7	23	92	0	99	38	20	4	36	1.74
2287275--2287337	23	2.7	23	92	0	99	38	20	4	36	1.74
2287705--2287767	23	2.7	23	92	0	99	38	20	4	36	1.74
2288136--2288198	23	2.7	23	92	0	99	38	20	4	36	1.74
2288549--2288618	21	3.3	20	75	11	59	40	21	4	34	1.73
2288991--2289053	23	2.7	23	92	0	99	38	20	4	36	1.74
2289417--2289479	23	2.7	23	92	0	99	38	20	4	36	1.74
2289849--2289911	23	2.7	23	92	0	99	38	20	4	36	1.74
2290274--2290335	23	2.7	23	90	2	90	38	19	4	37	1.73
2290699--2290760	23	2.7	23	90	2	90	38	20	4	35	1.74
2290942--2290980	12	3.4	12	86	10	55	33	0	0	66	0.92
2291139--2291201	23	2.7	23	92	0	99	38	20	4	36	1.74
2291561--2291623	23	2.7	23	92	0	99	38	20	4	36	1.74
2291985--2292046	22	2.7	23	87	5	90	38	19	4	37	1.73
2291975--2292046	23	3.2	23	84	4	92	40	20	4	34	1.72
2292406--2292468	23	2.7	23	92	0	99	38	20	4	36	1.74
2292834--2292894	21	2.7	23	82	10	81	37	21	4	36	1.75
2292819--2292889	21	3.3	21	80	7	79	39	22	4	33	1.74
2293257--2293318	22	2.7	23	87	5	90	38	20	4	35	1.74
2293680--2293736	22	2.6	21	91	2	69	38	21	5	35	1.76
2293679--2293741	23	2.8	23	87	2	92	38	22	4	34	1.75
2294093--2294162	21	3.2	22	82	10	81	40	22	4	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2294526--2294586	23	2.7	23	85	5	72	37	19	4	37	1.74
2294936--2295006	21	3.3	21	77	13	72	39	22	4	33	1.74
2294941--2295011	23	3.2	22	84	8	90	39	22	4	33	1.74
2295372--2295428	23	2.5	23	91	2	89	38	21	5	35	1.76
2295785--2295855	22	3.2	23	84	6	92	39	22	4	33	1.74
2296201--2296272	23	3.2	21	73	21	58	41	20	4	33	1.72
2296216--2296278	23	2.7	23	92	0	99	38	20	4	36	1.74
2296643--2296704	22	2.7	23	87	5	90	38	20	4	35	1.74
2297050--2297119	22	3.2	21	70	20	54	41	21	4	32	1.73
2297065--2297125	22	2.7	23	82	10	81	39	19	4	36	1.74
2297483--2297540	23	2.5	23	94	0	98	37	20	5	36	1.75
2297891--2297965	22	3.5	22	84	10	84	41	21	4	33	1.72
2298323--2298384	23	2.7	23	90	2	90	38	17	4	38	1.71
2298734--2298805	23	3.2	23	84	4	92	40	22	4	33	1.73
2299573--2299635	23	2.7	23	92	0	99	38	20	4	36	1.74
2299987--2300047	23	2.8	22	85	7	81	37	22	4	34	1.76
2300065--2300108	21	2.0	22	83	12	56	36	13	11	38	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!