genome.fa.s3805.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003805.1 Hibiscus syriacus cultivar Beakdansim tig00008145_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2300233

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1239 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544168--544531	38	9.9	37	78	16	336	44	3	6	45	1.47
544416--544512	30	3.2	30	89	4	142	42	3	6	48	1.44
544587--544625	3	12.7	3	89	5	60	30	0	2	66	1.05
544590--544632	19	2.3	19	91	0	68	27	0	2	69	1.00
544584--544625	22	1.9	22	95	0	75	30	0	2	66	1.04
545786--545827	4	10.0	4	85	10	57	26	0	2	71	0.98
545782--545819	18	2.2	17	90	4	58	23	0	5	71	1.07
545770--545827	25	2.3	24	85	11	73	24	0	5	70	1.07
545787--545898	54	2.1	54	82	12	133	24	5	0	69	1.15
545837--545898	19	3.0	22	79	9	60	20	4	0	74	1.00
545878--545912	13	2.6	13	90	4	52	17	11	2	68	1.31
545953--546003	2	25.5	2	100	0	102	49	0	0	50	1.00
547759--547821	11	5.9	11	72	10	51	57	0	3	39	1.15
548626--548710	7	12.3	7	77	7	84	22	1	34	42	1.61
548629--548723	21	4.6	21	81	7	95	22	1	32	44	1.60
549517--549560	15	2.9	15	89	0	61	6	18	45	29	1.75
550097--550170	11	6.6	11	73	11	53	29	16	22	31	1.96
550097--550173	34	2.3	34	88	6	113	28	18	22	31	1.97
559954--560026	3	24.7	3	97	2	139	32	0	0	67	0.91
565613--565667	5	10.8	5	78	21	53	0	20	1	78	0.85
565620--565667	8	5.9	8	88	11	71	0	20	2	77	0.88
568317--568654	131	2.6	131	87	0	462	31	10	17	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576326--576396	21	3.3	20	70	16	52	25	18	22	33	1.96
576337--576410	23	3.3	23	73	7	80	25	17	21	35	1.95
576326--576410	44	1.9	44	90	0	134	27	17	21	34	1.96
576616--576652	18	2.1	18	94	0	65	51	0	13	35	1.41
583002--583091	44	2.0	44	89	4	137	23	23	23	30	1.99
583008--583095	21	4.0	24	72	19	68	25	21	23	29	1.99
586648--586689	16	2.7	16	85	3	50	19	7	0	73	1.05
587606--588058	242	1.9	240	89	0	708	34	10	13	41	1.79
589433--589495	27	2.6	23	85	10	72	26	19	17	36	1.94
589433--589497	23	2.6	27	85	9	84	27	20	16	35	1.94
593002--593087	45	1.9	45	87	0	127	32	23	9	34	1.87
598554--598705	64	2.4	65	84	7	186	35	19	19	25	1.95
599269--599348	22	3.6	22	93	0	133	16	25	30	28	1.96
599335--599375	18	2.3	18	100	0	82	14	17	34	34	1.90
599345--599385	18	2.3	18	86	0	55	24	17	31	26	1.97
611749--611804	15	3.7	15	92	2	85	58	12	19	8	1.60
615635--615787	50	3.3	50	69	23	141	53	5	38	2	1.37
616295--616325	12	2.6	12	94	0	53	12	6	9	70	1.31
617814--618017	6	34.2	6	92	1	176	37	0	0	62	0.96
617814--618017	18	11.6	18	86	5	220	37	0	0	62	0.96
618113--618153	15	2.7	15	80	0	55	46	14	9	29	1.77
618073--618371	85	3.5	85	89	2	449	33	17	20	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618350--618394	13	3.5	13	84	0	54	33	20	20	26	1.97
628674--628899	121	1.9	120	82	4	285	46	9	7	37	1.65
628961--628995	16	2.2	16	90	10	54	40	0	0	60	0.97
630278--630317	6	6.7	6	85	0	53	25	15	7	52	1.68
630278--630317	12	3.3	12	100	0	80	25	15	7	52	1.68
634435--634660	114	2.0	114	92	0	380	33	15	20	30	1.94
636384--636464	39	2.1	39	85	0	108	32	22	20	24	1.98
636643--636754	54	2.1	54	93	0	188	35	17	25	21	1.95
637121--637175	22	2.5	22	81	0	65	36	14	12	36	1.84
638030--638245	76	2.8	77	92	1	355	22	18	21	36	1.95
638261--638617	113	3.2	113	97	0	678	39	16	17	26	1.90
638599--638636	20	1.9	20	100	0	76	50	5	23	21	1.69
638406--639049	206	3.0	206	88	8	982	38	16	18	27	1.92
638519--638710	93	2.1	93	98	0	375	38	16	17	27	1.92
638612--639087	113	4.2	113	96	0	864	38	15	19	26	1.92
638288--639090	319	2.4	326	92	4	1316	38	16	18	26	1.91
639031--639110	39	2.1	39	92	4	135	51	6	22	20	1.69
639043--639088	22	2.0	22	84	12	58	54	4	23	17	1.61
639254--639317	25	2.5	26	82	9	71	39	0	0	60	0.97
639258--639294	3	13.0	3	83	11	51	35	0	0	64	0.94
640503--640542	20	2.0	21	90	5	64	37	10	0	52	1.35
640601--640640	3	13.3	3	84	10	55	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
640601--640643	16	2.6	16	92	3	68	27	0	0	72	0.85
640822--640866	19	2.4	19	85	7	56	31	0	0	68	0.89
640831--640870	19	2.2	19	90	4	64	32	0	0	67	0.91
640735--640957	118	1.9	118	84	4	299	37	8	8	45	1.66
645082--645127	24	1.9	24	82	8	58	47	0	4	47	1.21
646829--646894	33	2.0	34	93	3	116	36	24	15	24	1.93
650732--650830	33	3.0	34	86	4	139	42	24	10	23	1.84
651593--651650	13	4.6	13	73	14	50	36	0	13	50	1.42
651829--651871	21	2.0	21	86	13	61	69	0	0	30	0.88
651767--651882	61	1.9	61	80	7	137	56	2	0	39	1.19
652416--652454	21	1.9	20	89	5	60	30	10	7	51	1.64
659503--659610	39	2.9	37	87	5	155	45	2	5	46	1.41
660642--660731	5	17.6	5	70	13	58	16	11	1	71	1.20
660623--660698	15	4.9	15	82	4	53	22	7	0	69	1.14
661423--661494	25	2.9	25	95	0	135	23	26	18	31	1.97
676133--676299	87	1.9	86	91	1	271	41	10	13	34	1.78
677151--677197	20	2.4	19	75	10	58	14	19	14	51	1.77
676433--677227	363	2.2	364	89	1	1218	26	14	14	44	1.84
676433--677226	182	4.4	182	88	1	1173	26	14	14	44	1.84
678824--678870	19	2.6	17	86	10	58	29	25	17	27	1.97
678822--679001	65	2.8	64	83	4	211	28	23	20	27	1.99
678772--679001	65	3.6	66	78	10	203	29	24	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
684790--684869	24	3.5	23	67	17	60	25	23	22	28	1.99
687552--687731	65	2.8	63	84	5	209	28	24	20	26	1.99
687683--687731	19	2.6	19	84	9	57	24	28	20	26	1.99
690926--690950	13	1.9	13	100	0	50	20	16	40	24	1.91
701517--701554	19	2.0	19	100	0	76	15	21	5	57	1.57
705141--705189	15	3.5	15	81	13	59	32	0	0	67	0.91
714017--714087	24	3.1	24	66	25	71	36	9	21	32	1.86
717784--717811	13	2.2	13	100	0	56	35	28	7	28	1.84
719819--719889	24	3.1	24	62	25	62	32	22	9	35	1.87
719819--719912	45	2.1	44	88	2	134	31	22	8	37	1.84
721650--721693	23	1.9	23	85	0	61	27	20	9	43	1.82
722709--722833	60	2.1	60	84	0	160	34	20	4	40	1.71
722972--722997	3	8.7	3	100	0	52	30	0	0	69	0.89
723413--723452	21	1.9	21	85	10	55	75	2	22	0	0.93
724580--724724	45	3.2	45	92	1	227	30	24	6	38	1.81
724637--724710	20	3.2	24	62	30	61	29	22	9	37	1.86
724730--724772	20	2.2	20	91	0	68	55	20	4	18	1.60
731295--731331	19	1.9	19	88	0	56	37	18	24	18	1.94
731797--731928	46	2.9	45	90	2	201	31	24	6	38	1.79
731797--731950	45	3.4	45	89	4	213	30	24	5	39	1.77
731947--731989	20	2.2	20	86	0	59	58	18	4	18	1.56
733130--733179	20	2.5	20	86	0	64	28	34	16	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733147--733184	20	1.9	20	94	0	67	23	39	13	23	1.90
733156--733212	28	2.0	28	93	0	96	22	38	15	22	1.92
740637--740680	21	2.1	21	83	8	54	9	38	15	36	1.80
741812--741849	20	1.9	20	88	0	58	31	31	15	21	1.94
741869--741959	46	2.0	46	91	2	148	27	26	18	27	1.98
741810--742020	110	1.9	109	83	7	275	29	24	17	28	1.97
744052--744090	19	2.1	19	100	0	78	20	25	10	43	1.83
745743--745807	30	2.2	30	86	5	87	30	27	12	29	1.93
747709--747749	13	2.9	13	89	10	55	41	21	21	14	1.89
751286--751338	20	2.6	20	82	11	63	33	20	16	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11