genome.fa.s3806.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003806.1 Hibiscus syriacus cultivar Beakdansim tig00008146_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1419252

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276910--276953	22	2.0	23	82	13	56	47	9	11	31	1.71
278196--278271	31	2.5	31	97	0	143	27	17	14	40	1.88
278460--278520	28	2.2	28	96	0	113	55	19	3	21	1.57
280071--280112	15	2.7	15	88	3	57	26	0	2	71	0.98
280079--280124	20	2.2	21	84	3	58	28	0	2	69	1.00
280087--280128	20	2.1	20	86	8	59	26	0	0	73	0.83
281262--281290	3	9.7	3	100	0	58	68	31	0	0	0.89
283342--283429	35	2.5	35	81	0	104	42	18	26	13	1.87
283404--283449	23	2.0	23	87	8	67	39	23	21	15	1.92
283424--283464	16	2.6	16	92	0	64	46	24	17	12	1.82
285217--287278	694	3.0	691	88	5	3072	34	14	15	34	1.89
292672--292707	17	2.1	18	89	5	56	55	0	0	44	0.99
293294--293377	20	4.2	20	78	0	87	40	20	15	23	1.90
298075--298110	19	1.9	19	88	5	56	19	16	8	55	1.66
298317--299313	4	251.0	4	97	1	1810	25	1	24	48	1.60
302119--302154	17	2.1	18	89	5	56	55	0	0	44	0.99
303076--303134	24	2.5	24	94	2	102	42	3	22	32	1.70
303078--303157	24	3.3	25	86	8	76	41	3	22	32	1.72
303163--303205	18	2.2	20	84	15	56	69	2	4	23	1.18
304173--304219	14	3.2	15	82	11	62	44	0	0	55	0.99
304240--304287	11	4.3	11	86	5	69	47	8	2	41	1.45
304254--304339	22	4.0	21	76	13	61	47	5	4	41	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304364--304538	26	8.0	21	67	27	91	39	5	8	47	1.55
304404--304547	26	5.2	26	70	22	98	40	6	7	45	1.58
304364--304484	34	3.5	35	75	19	105	39	4	6	49	1.48
304381--304508	60	2.1	61	88	4	188	39	3	7	49	1.48
305234--305407	53	3.3	52	80	6	147	22	31	5	41	1.76
305330--305677	166	2.1	162	86	6	486	20	29	4	45	1.70
305452--305686	55	4.3	55	70	14	180	21	30	4	43	1.72
309000--309042	18	2.4	18	92	0	68	20	6	0	72	1.08
309082--309170	34	2.5	35	82	7	92	24	6	0	68	1.13
323189--323268	30	2.7	30	86	7	117	41	10	22	26	1.85
323722--323765	18	2.4	18	84	0	52	56	4	13	25	1.56
327036--327142	5	20.8	5	67	12	56	20	5	2	71	1.20
327030--327093	16	4.1	16	72	11	60	15	6	4	73	1.20
330044--330083	18	2.2	18	86	8	55	25	5	0	70	1.08
330135--330215	35	2.3	36	84	2	101	23	7	0	69	1.14
333911--333949	16	2.4	16	83	8	53	23	7	0	69	1.14
338403--338479	7	10.4	8	74	23	53	79	5	15	0	0.91
338403--338466	18	3.5	19	79	8	62	81	4	14	0	0.85
338403--338486	28	3.0	26	78	16	71	78	5	14	1	0.99
338403--338479	19	4.2	18	75	17	68	79	5	15	0	0.91
338425--338490	20	3.4	20	82	12	68	80	4	13	1	0.94
338403--338492	27	3.3	27	81	9	85	78	5	14	1	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338416--338490	19	3.8	21	80	16	63	78	5	14	1	0.99
339097--339173	22	3.5	22	77	7	84	41	24	9	24	1.84
339921--340054	37	3.7	35	81	7	151	26	20	14	38	1.92
339921--340058	36	3.8	36	82	6	163	26	20	14	39	1.91
340059--341106	106	10.0	106	82	4	1227	34	25	18	22	1.96
340063--341107	212	5.0	212	88	4	1512	34	25	18	22	1.96
340501--340684	91	2.0	91	94	0	323	33	26	17	23	1.96
340077--341106	515	2.0	515	91	0	1677	33	25	18	22	1.96
341795--341895	34	2.8	36	85	7	134	41	11	14	31	1.83
342544--342579	18	2.1	17	89	5	54	25	2	0	72	0.98
346972--347040	4	17.2	4	100	0	138	50	24	0	24	1.49
349455--349629	34	5.2	34	97	0	325	58	0	10	30	1.31
357586--357641	15	3.8	15	86	11	80	26	1	0	71	0.96
361392--361439	18	2.7	18	83	0	51	16	41	12	29	1.85
367045--367077	12	2.6	13	90	4	50	36	12	6	45	1.66
368463--368511	22	2.1	23	85	7	64	14	0	24	61	1.33
368793--368830	13	3.0	13	80	7	51	50	7	2	39	1.46
369574--369615	19	2.2	19	86	4	57	21	19	0	59	1.38
384694--384745	21	2.5	21	100	0	104	26	7	21	44	1.79
385156--385193	18	2.2	17	95	4	67	10	0	2	86	0.66
387828--387861	17	1.9	18	88	5	52	20	5	5	67	1.33
390265--390405	62	2.3	62	76	3	142	39	21	15	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394248--394348	34	2.9	34	85	7	125	26	21	5	45	1.75
395246--395274	5	5.8	5	100	0	58	17	0	0	82	0.66
398230--398302	5	14.6	5	95	0	101	12	27	20	39	1.88
398234--398319	5	17.6	5	95	2	77	9	31	22	37	1.86
398883--398975	43	2.2	43	82	0	114	20	9	8	61	1.53
398898--398991	43	2.1	43	82	3	107	19	13	8	58	1.61
399018--399108	43	2.1	44	81	2	103	21	16	7	53	1.67
399036--399259	43	5.2	42	75	8	157	25	15	5	53	1.64
399058--399219	86	1.9	87	80	6	195	25	16	4	54	1.60
400073--400104	2	16.0	2	100	0	64	50	0	0	50	1.00
401235--401314	30	2.7	30	70	9	76	56	1	1	41	1.15
401314--401349	18	1.9	19	88	5	56	58	2	0	38	1.13
409702--409777	30	2.5	29	81	8	80	42	28	6	22	1.78
410483--410521	16	2.7	14	88	11	53	28	0	0	71	0.86
410486--410521	13	2.8	13	88	12	56	27	0	0	72	0.85
410510--410563	20	2.5	23	88	8	78	38	1	0	59	1.08
410513--410563	23	2.2	23	89	6	77	39	1	0	58	1.09
410482--410547	3	22.3	3	74	20	50	33	1	0	65	1.02
411959--411989	15	2.1	15	100	0	62	19	0	6	74	1.03
412120--412368	134	1.9	132	84	2	338	38	8	8	44	1.63
412331--412374	23	1.9	23	85	0	61	50	6	2	40	1.42
412900--412949	20	2.4	21	83	9	59	28	4	2	66	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415558--415586	13	2.3	13	94	5	51	24	13	6	55	1.63
415559--415624	27	2.5	26	75	2	69	22	12	7	57	1.60
415601--415642	22	1.9	22	85	0	57	28	11	7	52	1.64
418650--418711	32	1.9	32	93	0	106	45	16	19	19	1.86
422020--422173	54	2.9	54	89	2	222	31	16	25	27	1.96
422940--423273	113	3.0	113	91	1	537	37	14	19	28	1.92
423324--423420	39	2.5	40	94	1	178	49	9	22	18	1.76
423336--423404	17	3.3	22	67	21	67	52	10	23	14	1.72
423201--423544	163	2.1	163	96	0	634	42	13	20	23	1.87
423537--423651	57	2.0	58	87	1	169	35	13	19	32	1.90
423982--424037	17	3.4	17	69	11	53	55	3	23	17	1.58
424182--424220	16	2.7	14	88	11	53	28	0	0	71	0.86
424185--424220	13	2.8	13	88	12	56	27	0	0	72	0.85
424208--424265	26	2.3	26	88	8	84	37	1	0	60	1.07
424181--424249	3	23.3	3	75	19	56	33	1	0	65	1.02
425695--425725	15	2.1	15	100	0	62	19	0	6	74	1.03
425858--426098	134	1.8	133	88	0	374	38	8	9	44	1.66
430466--430633	84	2.0	83	85	1	228	36	8	19	35	1.83
435509--435557	20	2.5	20	93	0	80	8	30	44	16	1.76
436355--436468	44	2.7	42	77	11	133	28	17	21	32	1.96
436270--436863	323	1.8	323	90	1	949	28	20	18	32	1.96
436802--437025	119	1.9	119	85	1	315	24	23	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443084--443117	13	2.6	13	100	0	68	55	8	20	14	1.65
444690--444770	31	2.6	31	88	0	117	33	37	14	14	1.88
445651--445684	18	1.9	17	88	5	50	41	2	2	52	1.31
446532--446572	16	2.5	17	84	4	57	68	4	4	21	1.28
452245--452284	21	2.0	20	85	5	53	77	2	17	2	0.99
452241--452335	26	3.7	23	75	19	82	81	2	13	3	0.91
452273--452333	13	4.7	13	78	15	56	83	1	13	1	0.79
452247--452327	33	2.3	35	83	6	103	81	2	13	2	0.90
452820--452935	61	1.9	61	96	0	214	35	23	12	28	1.92
454572--454615	21	2.3	18	88	11	61	77	11	2	9	1.08

Tables:   1   2   3   4   5   6   7