genome.fa.s3806.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003806.1 Hibiscus syriacus cultivar Beakdansim tig00008146_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1419252

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
811994--812057	31	2.1	31	88	5	94	23	3	0	73	0.97
811991--812053	5	11.6	5	76	18	56	23	1	0	74	0.90
812996--813047	23	2.4	22	90	6	79	23	19	28	28	1.98
816215--816254	18	2.2	18	100	0	80	15	15	32	37	1.88
819925--819973	21	2.3	22	83	16	59	22	16	28	32	1.95
820831--820863	2	16.5	2	100	0	66	48	0	0	51	1.00
824066--824105	21	2.0	20	85	5	53	60	7	0	32	1.25
824641--824696	28	2.0	29	86	10	80	32	19	14	33	1.92
826403--826433	2	15.5	2	100	0	62	0	51	0	48	1.00
830101--830166	31	2.3	28	78	16	80	19	10	15	54	1.69
830112--830179	31	2.2	31	100	0	136	19	11	19	50	1.78
830168--830249	38	2.2	38	90	0	128	21	8	23	46	1.79
831007--831054	8	5.8	8	82	7	60	81	0	2	16	0.79
831010--831051	22	1.9	22	85	9	59	78	0	2	19	0.86
832562--833818	84	15.0	84	88	1	1524	24	17	22	35	1.95
834764--834795	10	2.8	12	86	13	50	25	28	18	28	1.98
841803--841839	13	2.8	13	91	0	56	16	43	18	21	1.88
841847--841921	28	2.6	28	80	4	78	21	9	25	44	1.82
843360--843679	84	3.8	84	89	0	426	23	17	23	35	1.95
846623--847158	265	2.0	265	97	0	1000	40	16	16	25	1.89
847614--847664	15	3.5	15	84	12	70	74	0	3	21	0.98
848758--849015	42	6.2	42	91	0	401	24	4	19	51	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
863255--863305	8	6.0	8	80	11	57	31	1	1	64	1.15
863299--863354	24	2.4	23	82	5	78	42	28	10	17	1.83
865208--865263	20	3.2	20	62	32	54	37	21	25	16	1.93
865768--865837	24	3.1	24	66	29	71	31	22	8	37	1.85
865708--865876	44	3.8	45	88	7	236	31	21	7	39	1.81
865708--865899	89	2.2	90	84	10	263	31	21	7	39	1.81
872368--872615	123	2.0	123	98	0	478	43	18	18	20	1.89
886446--886549	43	2.4	43	81	0	118	28	28	19	23	1.98
886190--886807	335	1.8	335	91	0	1029	33	21	19	25	1.97
887362--887411	24	2.1	24	92	0	82	26	40	12	22	1.88
890848--891065	45	4.9	45	84	4	255	29	21	8	40	1.83
891606--891647	22	1.9	22	100	0	84	26	28	14	30	1.95
891691--891763	22	3.5	21	73	21	57	30	23	16	30	1.96
893895--894234	35	10.0	35	79	7	369	43	19	16	20	1.88
893856--893994	30	4.5	30	72	12	100	41	17	17	23	1.90
894403--894453	3	17.7	3	80	15	63	33	1	0	64	1.05
894403--894451	20	2.5	19	83	9	71	32	2	0	65	1.04
894453--894534	24	3.4	24	94	0	146	42	29	15	12	1.83
903485--903569	28	3.0	28	83	6	109	27	12	21	38	1.90
908340--908378	19	2.1	19	95	0	69	2	25	10	61	1.41
914263--914305	23	1.9	22	95	4	77	30	25	18	25	1.98
916738--916762	10	2.5	10	100	0	50	0	12	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
916713--916780	32	2.0	35	86	8	97	7	14	7	70	1.32
925017--925059	23	1.9	22	90	4	68	25	23	23	27	2.00
925937--925976	20	2.0	20	100	0	80	40	15	30	15	1.87
937552--937629	26	3.0	26	92	3	122	7	38	25	28	1.83
951174--951327	42	3.5	42	67	17	107	31	15	15	37	1.89
951168--951374	89	2.4	88	90	1	335	32	15	15	36	1.90
951235--951377	45	3.2	45	69	14	134	33	13	15	37	1.87
952340--952381	18	2.3	18	91	0	66	16	47	23	11	1.80
952358--952387	13	2.3	13	94	0	51	16	43	26	13	1.85
952376--952427	8	6.5	8	78	13	54	13	30	28	26	1.94
952379--952427	15	3.1	15	85	5	62	12	30	28	28	1.93
952379--952418	7	5.4	7	82	11	53	12	30	27	30	1.93
953711--953745	18	1.9	18	88	0	52	54	0	17	28	1.43
954941--955035	24	4.0	24	85	9	122	24	17	16	41	1.90
956019--956116	41	2.4	41	82	3	117	32	12	21	33	1.90
961411--961462	14	3.6	14	73	14	52	32	26	19	21	1.97
962769--962829	26	2.4	25	81	8	77	49	26	6	18	1.71
964110--964168	25	2.4	25	94	0	100	13	11	32	42	1.81
967227--967266	19	2.2	19	86	13	57	42	5	12	40	1.64
970967--971015	20	2.5	20	100	0	98	28	22	24	24	1.99
972441--972498	23	2.5	23	91	0	89	20	24	25	29	1.99
972441--972506	23	2.9	23	88	0	78	21	22	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
977458--977518	23	2.7	23	92	0	104	16	26	27	29	1.97
979552--979582	12	2.6	12	94	0	53	16	38	35	9	1.81
983045--983136	23	4.2	23	75	14	70	43	1	0	55	1.07
983071--983143	20	3.6	21	75	14	73	42	1	0	56	1.08
983058--983148	20	4.7	20	73	19	68	42	1	1	54	1.14
983175--983218	15	2.8	16	79	6	63	56	2	0	40	1.11
983922--983955	16	2.1	16	88	0	50	50	0	2	47	1.16
983998--984031	16	2.0	18	88	11	54	26	2	5	64	1.30
984498--984745	130	1.9	130	88	0	370	35	12	16	36	1.86
985143--985216	35	2.1	35	84	0	94	41	1	16	40	1.56
992894--993031	65	2.1	64	84	4	179	30	21	15	32	1.94
994983--995022	21	1.9	21	89	0	62	55	2	7	35	1.42
998830--998903	21	3.4	21	67	20	53	32	21	18	27	1.97
998889--998934	23	2.0	23	91	0	74	19	21	23	34	1.96
1010845--1010879	12	2.9	12	100	0	70	17	8	8	65	1.44
1012528--1012623	5	18.8	5	73	21	60	75	3	2	19	1.05
1012541--1012611	21	3.7	19	71	25	60	71	4	2	21	1.15
1012532--1012624	15	6.3	15	71	21	72	74	3	2	20	1.07
1012764--1012829	30	2.2	29	79	10	71	68	3	4	24	1.23
1014047--1014966	80	11.3	80	87	3	1173	23	19	23	33	1.97
1014047--1014966	237	3.8	240	86	3	1134	23	19	23	33	1.97
1016100--1016362	95	2.7	95	85	3	321	32	18	15	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1020125--1020154	13	2.3	13	94	0	51	70	0	0	30	0.88
1020157--1020203	20	2.3	20	100	0	94	23	23	10	42	1.85
1020280--1020314	3	11.7	3	88	11	54	71	0	0	28	0.86
1020279--1020370	5	17.6	5	78	12	55	72	1	4	21	1.08
1020280--1020316	12	3.0	13	92	7	60	70	0	0	29	0.88
1020488--1020560	30	2.5	27	76	14	67	67	2	6	23	1.28
1021455--1021488	2	17.0	2	93	0	59	47	50	2	0	1.16
1026721--1026747	2	13.5	2	100	0	54	51	48	0	0	1.00
1026747--1026773	2	13.5	2	100	0	54	51	0	0	48	1.00
1026757--1027317	272	2.1	272	93	0	969	39	14	12	33	1.84
1028770--1028833	33	1.9	33	84	6	85	26	31	14	28	1.95
1030001--1030054	24	2.5	20	80	14	56	37	22	18	22	1.95
1042028--1042066	19	2.2	19	86	9	55	58	5	5	30	1.41
1043227--1043267	19	2.2	19	86	0	55	46	31	2	19	1.63
1048726--1048807	41	2.0	41	100	0	164	41	9	9	39	1.71
1049768--1049810	13	3.3	12	81	12	50	30	0	0	69	0.88
1049764--1049814	19	2.7	19	79	11	59	33	0	0	66	0.92
1051581--1051631	26	2.0	26	92	0	84	50	3	7	37	1.50
1052587--1052631	22	2.0	22	95	0	81	37	24	4	33	1.76
1053450--1053617	60	2.8	60	78	2	176	30	20	6	42	1.77
1053961--1053987	2	13.5	2	100	0	54	48	0	0	51	1.00
1057067--1057500	235	1.8	235	95	1	789	40	9	19	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058043--1058078	18	2.0	18	88	0	54	38	11	22	27	1.88
1073272--1073365	46	2.0	48	83	8	122	34	10	21	34	1.88
1074112--1074144	16	1.9	18	88	11	52	18	18	9	54	1.69
1079950--1080061	22	5.3	22	65	15	67	27	18	21	32	1.97
1079951--1080064	42	2.7	42	91	1	185	26	19	21	33	1.97
1080203--1080313	42	2.7	42	83	6	129	32	17	18	31	1.94
1079858--1080529	253	2.7	253	94	0	1184	33	15	17	33	1.91
1080456--1080523	22	3.2	21	65	23	52	32	19	19	29	1.96
1080933--1080966	11	3.0	11	86	4	50	41	0	5	52	1.25
1083320--1083503	98	1.9	100	89	2	291	33	17	18	30	1.94

Tables:   1   2   3   4   5   6   7