genome.fa.s3806.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003806.1 Hibiscus syriacus cultivar Beakdansim tig00008146_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1419252

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1084171--1084324	81	1.9	80	86	6	222	29	12	24	33	1.92
1085317--1085808	62	8.0	62	89	2	713	26	24	15	33	1.95
1085473--1085573	31	3.2	32	68	20	97	25	25	15	32	1.96
1085317--1085808	184	2.7	185	90	2	747	26	24	15	33	1.95
1085812--1086052	89	2.7	89	83	3	281	30	18	20	30	1.96
1086139--1087058	82	11.2	82	85	1	1173	36	22	18	23	1.95
1092946--1093003	29	2.0	30	89	3	91	50	8	0	41	1.33
1098797--1098838	14	2.8	15	89	10	68	14	28	33	23	1.94
1098797--1098847	16	3.3	16	83	10	70	13	27	33	25	1.94
1098797--1098857	30	2.0	30	84	6	79	14	27	31	26	1.95
1100212--1100257	22	2.0	23	91	4	76	39	8	32	19	1.82
1100720--1100751	17	1.9	17	93	6	57	40	0	12	46	1.42
1103340--1103398	23	2.7	23	89	5	86	33	33	16	15	1.91
1110859--1110891	14	2.4	14	94	0	57	33	6	30	30	1.82
1124594--1125015	121	3.5	122	85	1	537	32	17	20	28	1.96
1124802--1124890	44	2.0	44	84	4	117	31	17	19	31	1.95
1126225--1126272	16	3.0	16	79	8	53	31	2	4	62	1.26
1128475--1128547	23	3.2	23	92	0	119	38	21	5	34	1.77
1128914--1128976	23	2.7	23	92	0	99	38	20	4	36	1.74
1128312--1129183	428	2.0	429	95	1	1583	39	12	7	40	1.72
1129393--1129465	23	3.2	23	92	0	119	38	21	5	34	1.77
1129483--1129527	22	2.0	22	83	8	56	40	13	8	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1128741--1129812	490	2.2	487	96	0	1984	40	12	7	39	1.70
1129812--1129875	25	2.6	25	90	2	94	35	12	9	42	1.75
1132329--1133635	183	7.1	183	96	1	2325	32	16	14	35	1.90
1134839--1134907	3	23.0	3	78	0	75	24	33	5	36	1.80
1134843--1134919	24	3.2	24	81	0	82	22	33	7	36	1.83
1134843--1134924	36	2.3	36	93	0	137	21	32	7	37	1.81
1134865--1134919	12	4.6	12	86	0	74	20	34	9	36	1.84
1134861--1134924	18	3.6	18	82	0	92	20	32	7	39	1.81
1134861--1134924	6	10.7	6	81	0	65	20	32	7	39	1.81
1136388--1138742	199	11.9	200	97	1	4406	30	17	14	36	1.90
1138823--1138883	19	3.3	18	88	2	59	52	11	1	34	1.47
1138835--1138883	19	2.6	19	96	0	89	55	10	2	32	1.45
1140673--1140735	33	1.9	33	86	0	90	23	47	0	28	1.52
1140769--1140833	21	3.1	21	93	0	103	16	30	10	41	1.83
1142848--1142900	24	2.2	24	83	6	63	26	7	13	52	1.66
1143046--1143092	20	2.4	19	79	10	58	21	17	8	53	1.70
1143227--1143273	20	2.3	20	86	10	69	19	17	8	55	1.67
1143013--1143483	180	2.6	181	88	2	687	26	17	13	42	1.86
1143549--1144044	229	2.2	229	95	2	906	39	7	8	44	1.62
1146317--1146363	2	23.5	2	100	0	94	48	0	0	51	1.00
1146981--1147037	26	2.1	27	87	3	80	47	0	10	42	1.38
1146979--1147038	27	2.2	28	82	8	79	46	0	10	43	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148745--1148811	29	2.2	30	80	17	77	50	7	10	31	1.64
1150278--1150317	21	1.9	21	89	0	62	37	30	20	12	1.89
1150545--1151195	332	2.0	332	99	0	1293	32	16	24	25	1.96
1158793--1158830	2	19.0	2	100	0	76	50	0	0	50	1.00
1169296--1169339	14	2.9	15	78	21	56	31	0	2	65	1.05
1170502--1170535	5	6.8	5	100	0	68	38	0	0	61	0.96
1174196--1174241	24	1.9	24	90	0	74	39	23	13	23	1.90
1174203--1174259	24	2.4	24	84	0	69	40	21	14	24	1.90
1178816--1178894	22	3.5	22	80	10	97	31	21	20	26	1.98
1181448--1181483	17	2.1	17	100	0	72	22	11	16	50	1.77
1181443--1181499	17	3.0	20	78	19	68	26	12	14	47	1.79
1181721--1181794	22	3.3	22	86	3	103	33	25	16	24	1.95
1181724--1181801	23	3.4	23	77	7	79	33	26	16	23	1.96
1181714--1181801	45	2.0	45	86	4	124	32	26	18	22	1.97
1185002--1185055	21	2.6	21	100	0	108	57	3	3	35	1.34
1188168--1188245	3	28.0	3	75	19	62	67	1	0	30	0.98
1188168--1188251	14	5.9	15	72	16	63	69	1	0	29	0.97
1188172--1188223	11	4.6	11	78	2	50	69	0	0	30	0.89
1188168--1188244	19	4.3	19	82	12	83	67	1	0	31	0.99
1188182--1188246	17	3.8	17	82	9	60	69	1	0	29	0.98
1188182--1188256	19	3.7	19	78	15	80	69	2	0	28	1.02
1188498--1189037	113	4.8	112	92	2	848	27	19	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1189067--1189380	76	4.1	76	96	0	556	34	22	19	22	1.97
1189381--1189705	164	2.0	166	90	1	519	40	12	12	35	1.80
1190220--1190274	22	2.5	22	93	0	101	40	14	10	34	1.81
1197138--1197177	21	1.9	21	90	10	64	62	12	7	17	1.52
1200035--1200236	110	1.8	109	81	9	250	43	8	9	38	1.68
1201771--1201837	3	24.0	3	82	14	81	67	1	0	31	1.00
1201771--1201847	20	3.9	19	83	8	84	68	2	0	28	1.02
1202401--1202815	90	4.7	90	90	3	589	34	21	18	26	1.96
1202418--1202820	179	2.3	175	89	3	603	34	21	18	25	1.95
1202901--1203367	43	10.3	43	77	12	443	29	29	12	28	1.93
1203017--1203085	22	3.2	22	64	12	61	24	28	14	31	1.95
1202996--1203063	21	3.2	21	64	12	57	30	30	11	26	1.92
1202901--1203367	141	3.4	140	79	16	539	29	29	12	28	1.93
1202889--1203350	184	2.5	183	85	4	667	29	29	12	28	1.93
1203398--1203671	36	7.4	36	85	4	334	36	14	21	27	1.92
1203564--1203628	21	3.4	21	68	24	70	36	12	26	24	1.91
1203389--1203699	36	8.4	39	83	3	186	36	13	21	29	1.91
1203974--1204098	34	3.7	34	93	0	196	36	11	21	30	1.88
1204206--1204340	32	4.2	32	94	1	216	31	24	14	29	1.95
1204206--1204340	65	2.1	64	91	1	216	31	24	14	29	1.95
1204470--1204499	14	2.1	14	100	0	60	46	6	6	40	1.56
1205374--1205413	21	1.9	21	94	0	71	2	12	2	82	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1210987--1211023	2	18.5	2	100	0	74	51	0	0	48	1.00
1212529--1212564	17	2.1	17	94	0	63	55	0	8	36	1.30
1213760--1213805	22	2.0	23	87	4	67	60	0	0	39	0.97
1219748--1219859	2	56.0	2	94	0	197	48	0	1	49	1.18
1221069--1221131	29	2.3	27	80	17	76	26	4	0	68	1.10
1221309--1221391	17	4.6	17	80	15	51	16	7	0	75	1.01
1221309--1221393	6	14.2	6	87	7	86	16	7	0	76	0.99
1221367--1221410	17	2.5	18	85	3	54	9	2	4	84	0.85
1221513--1221581	18	3.8	18	71	21	56	14	4	4	76	1.09
1227018--1227061	21	2.2	20	83	4	52	34	29	20	15	1.94
1227643--1227677	18	1.9	18	88	11	54	54	5	17	22	1.64
1227734--1227777	22	2.0	21	87	12	63	43	0	20	36	1.52
1228565--1228883	149	2.1	150	90	4	500	27	16	21	34	1.95
1228851--1228895	23	2.0	23	86	0	63	22	24	26	26	2.00
1232793--1232827	18	1.9	18	88	11	54	54	5	17	22	1.64
1233697--1233998	149	2.1	147	91	2	491	26	16	21	34	1.95
1234471--1234512	22	1.9	22	90	0	66	26	23	23	26	2.00
1236534--1236915	189	2.0	192	97	2	727	34	19	20	25	1.96
1241709--1241761	6	8.7	6	97	2	97	83	0	16	0	0.66
1242606--1242783	65	2.8	65	83	5	213	39	21	12	26	1.89
1243584--1243636	2	28.0	2	88	11	85	49	0	0	50	1.00
1244837--1244869	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1244903--1244935	2	16.5	2	100	0	66	48	0	0	51	1.00
1245052--1245133	6	13.3	6	78	10	67	12	7	3	76	1.11
1247678--1247718	20	2.0	20	100	0	82	51	0	4	43	1.23
1248280--1248310	16	2.0	15	93	6	53	38	3	0	58	1.15
1248349--1248376	14	2.0	14	100	0	56	21	0	7	71	1.09
1248381--1248405	6	4.2	6	100	0	50	36	0	0	64	0.94
1251438--1251486	21	2.3	22	80	16	59	51	6	2	40	1.38
1260617--1260675	31	1.9	31	85	0	82	23	6	27	42	1.79
1260607--1260673	15	4.4	15	76	10	64	25	5	25	43	1.77
1260779--1260851	24	3.0	24	89	0	110	20	26	23	30	1.99

Tables:   1   2   3   4   5   6   7