genome.fa.s3806.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003806.1 Hibiscus syriacus cultivar Beakdansim tig00008146_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1419252

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1262286--1262338	21	2.4	22	84	6	63	35	30	15	18	1.92
1262344--1262437	21	4.5	21	74	2	82	37	20	14	27	1.92
1263509--1263552	13	3.4	13	83	0	61	29	15	18	36	1.92
1263482--1263552	26	2.7	26	84	4	79	29	18	18	33	1.95
1273979--1274188	105	2.0	105	98	0	402	41	14	8	35	1.76
1274413--1274492	21	3.8	21	74	0	70	40	16	13	30	1.87
1283259--1283320	24	2.7	22	78	9	61	33	24	17	24	1.96
1283299--1283388	31	2.9	31	89	0	144	33	23	20	23	1.97
1286696--1286785	31	2.9	31	89	0	144	33	23	20	23	1.97
1315656--1315859	101	2.0	101	98	0	390	40	11	21	26	1.88
1316604--1316642	17	2.4	17	95	4	71	43	0	5	51	1.24
1331692--1331734	21	2.0	21	81	0	50	30	9	9	51	1.65
1332816--1332857	22	1.9	22	85	0	57	19	0	33	47	1.49
1333300--1333326	14	1.9	14	100	0	54	59	0	0	40	0.98
1333393--1333439	20	2.4	19	82	10	58	44	0	0	55	0.99
1333399--1333429	15	2.0	16	93	6	55	45	0	0	54	0.99
1333816--1333873	25	2.3	26	87	3	82	63	5	29	1	1.25
1333856--1333895	15	2.7	15	96	0	71	57	12	30	0	1.36
1335116--1335157	7	6.0	7	81	8	50	14	16	14	54	1.71
1335116--1335157	15	3.0	14	83	10	50	14	16	14	54	1.71
1335188--1335253	14	4.9	14	70	10	57	24	12	9	54	1.66
1339638--1339978	114	3.0	113	92	2	549	32	15	20	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1342588--1342642	22	2.5	22	84	0	74	36	14	12	36	1.84
1343042--1343718	113	6.0	113	87	1	937	36	15	19	27	1.92
1343049--1343715	225	3.0	225	90	1	1030	37	14	20	27	1.92
1343049--1343731	226	3.0	225	90	1	1044	36	15	19	28	1.92
1344038--1344082	8	5.4	8	91	2	63	31	0	0	68	0.89
1344041--1344086	3	16.0	3	86	8	69	32	0	0	67	0.91
1344480--1344557	26	3.0	26	79	3	86	57	7	33	1	1.35
1344480--1344537	25	2.3	26	84	3	73	65	5	27	1	1.23
1350648--1350783	64	2.1	65	87	1	193	27	22	18	31	1.97
1356589--1356668	23	3.6	23	75	13	94	23	25	25	26	2.00
1359327--1359482	64	2.4	65	88	1	224	26	22	19	31	1.98
1365006--1365110	33	3.2	33	91	0	156	16	20	8	54	1.68
1366821--1366850	4	7.8	4	92	7	53	76	0	0	23	0.78
1367910--1367950	11	3.7	11	87	6	57	17	12	0	70	1.16
1368272--1368336	12	5.5	11	83	10	58	83	12	4	0	0.80
1368278--1368336	24	2.4	24	88	2	82	81	13	5	0	0.85
1368292--1368343	12	4.3	12	100	0	104	76	15	7	0	0.99
1372586--1372627	22	1.9	22	90	9	68	14	11	4	69	1.34
1376904--1376953	17	3.0	17	79	5	57	24	28	22	26	1.99
1379180--1379287	24	4.5	24	83	4	121	18	12	16	51	1.75
1379179--1379287	12	9.2	12	72	13	73	19	12	16	51	1.76
1380576--1380684	42	2.6	41	79	12	123	45	15	22	15	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1388498--1388535	20	1.9	20	88	0	58	42	5	7	44	1.56
1388535--1388717	27	6.4	27	74	13	143	41	14	3	39	1.64
1388553--1388753	63	3.3	63	76	12	231	42	15	3	37	1.66
1388535--1388754	117	1.9	117	93	0	377	42	15	4	38	1.66
1391561--1391652	33	3.0	31	79	14	93	48	3	2	45	1.30
1391575--1391652	33	2.4	32	83	6	104	47	3	2	46	1.34
1391781--1391884	37	2.8	38	85	5	140	38	20	12	28	1.89
1391889--1391932	22	2.0	21	82	4	52	36	6	2	54	1.40
1392131--1392190	25	2.4	25	97	0	111	33	6	3	56	1.42
1396059--1396083	3	8.3	3	100	0	50	0	32	0	68	0.90
1397199--1397231	2	16.5	2	100	0	66	51	0	0	48	1.00
1397973--1398087	28	4.1	28	79	8	144	27	4	30	37	1.76
1397957--1398070	56	2.0	56	100	0	228	22	5	31	40	1.76
1398072--1398114	18	2.4	18	84	0	50	39	6	23	30	1.81
1398183--1398584	205	2.0	206	96	0	752	36	7	8	46	1.65
1398693--1398782	38	2.6	33	75	17	92	40	34	11	14	1.81
1400165--1400251	43	2.0	43	93	0	147	26	20	16	36	1.93
1400576--1400625	20	2.5	20	100	0	100	28	14	16	42	1.86
1403811--1403884	37	2.0	37	89	0	112	58	14	5	21	1.57
1405849--1405993	59	2.4	59	85	7	177	33	22	2	40	1.69
1406119--1406274	59	2.6	59	81	8	183	41	3	21	32	1.71
1409390--1409435	12	4.2	11	78	18	51	60	4	0	34	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1409780--1409857	23	3.4	23	78	7	86	21	14	23	41	1.89
1413906--1413954	23	2.2	23	85	3	64	28	12	12	46	1.77
1415021--1415062	16	2.4	18	88	11	61	35	0	2	61	1.09
1416505--1416880	60	6.3	59	79	4	297	38	13	11	35	1.82
1416739--1416917	60	3.0	59	79	8	184	43	11	6	37	1.68

Tables:   1   2   3   4   5   6   7

The End!