genome.fa.s4693.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004693.1 Hibiscus syriacus cultivar Beakdansim tig00010533_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2620943

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2511796--2511906	21	5.2	21	64	20	68	36	9	16	38	1.80
2521562--2521598	19	1.9	19	100	0	74	43	5	27	24	1.76
2524044--2524427	195	2.0	196	97	0	725	39	15	30	14	1.87
2524637--2524675	18	2.1	19	85	4	53	38	23	12	25	1.90
2526201--2526355	7	22.3	7	77	1	105	50	28	0	21	1.49
2526201--2526336	14	9.8	14	82	4	132	50	28	0	20	1.48
2526433--2526462	14	2.1	14	93	0	51	43	0	6	50	1.28
2530726--2531118	194	2.0	196	87	2	569	33	19	18	27	1.96
2541129--2541320	63	3.0	64	87	7	275	45	5	26	22	1.73
2541675--2541791	45	2.6	45	93	0	189	40	27	22	10	1.86
2541849--2541952	48	2.2	48	96	0	190	41	31	16	10	1.82
2544017--2544110	15	6.7	15	70	16	58	53	0	0	46	1.00
2543987--2544078	41	2.3	41	84	5	116	54	0	0	45	0.99
2544017--2544110	28	3.4	28	73	4	100	53	0	0	46	1.00
2544023--2544083	20	2.9	22	72	18	58	57	0	0	42	0.98
2546551--2546641	44	2.0	46	89	10	143	37	6	15	40	1.73
2548929--2548994	6	11.0	6	82	6	71	3	54	0	42	1.15
2548930--2548994	18	3.6	18	91	4	96	3	55	0	41	1.15
2548944--2548995	12	4.3	12	90	0	86	0	59	0	40	0.97
2554246--2554282	13	2.8	14	88	8	51	56	0	0	43	0.99
2555556--2555608	22	2.5	22	87	3	81	24	0	5	69	1.09
2555556--2555608	21	2.5	20	85	11	70	24	0	5	69	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2557085--2557201	46	2.5	47	81	2	148	31	15	23	29	1.95
2567071--2567117	19	2.3	20	89	7	69	63	10	0	25	1.26
2567775--2567820	18	2.6	18	96	0	83	39	21	15	23	1.92
2568078--2568120	15	2.7	17	79	13	56	51	13	13	20	1.76
2570880--2571027	43	3.4	43	83	1	181	33	14	23	28	1.94
2571036--2571299	43	6.2	43	83	2	309	20	18	25	35	1.95
2571042--2571285	85	2.9	85	90	1	373	18	17	25	37	1.93
2571698--2571751	24	2.4	22	82	11	65	0	33	22	44	1.53
2580618--2580778	41	4.0	41	84	7	204	31	19	14	34	1.92
2580619--2580777	82	2.0	81	91	3	257	30	20	13	35	1.91
2580807--2581005	42	4.8	42	77	7	181	24	23	18	33	1.97
2583488--2583521	17	2.0	17	88	0	50	50	8	5	35	1.58
2586324--2586402	39	2.0	39	100	0	158	51	10	7	30	1.63
2587264--2587308	17	2.7	16	83	10	63	37	6	0	55	1.26
2588237--2588289	27	2.0	27	85	7	72	24	3	20	50	1.64
2589307--2589343	20	1.9	19	89	10	58	18	18	10	51	1.75
2591061--2591140	29	2.7	30	82	3	99	55	11	10	23	1.65
2596021--2596068	21	2.3	21	92	0	78	45	22	4	27	1.70
2598117--2598154	20	1.9	20	88	0	58	10	31	34	23	1.89
2600105--2600323	41	5.4	41	80	5	237	35	17	18	28	1.93
2600103--2600323	82	2.7	81	83	2	264	35	17	18	28	1.93
2600300--2600341	18	2.4	18	96	4	77	40	19	14	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2606671--2606716	23	2.0	23	82	0	56	26	13	10	50	1.74
2608164--2608264	45	2.2	45	91	0	157	34	10	20	33	1.88
2608336--2608381	20	2.4	19	82	7	58	21	19	21	36	1.95
2608421--2608472	20	2.6	20	71	17	54	25	30	19	25	1.98
2615952--2616190	29	8.3	28	83	7	184	45	16	5	33	1.69
2615952--2616192	57	4.2	56	86	7	297	45	16	4	32	1.69
2615996--2616191	58	3.4	58	90	2	288	44	17	5	32	1.70
2616202--2616243	17	2.4	18	88	4	68	9	21	50	19	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!