genome.fa.s4693.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004693.1 Hibiscus syriacus cultivar Beakdansim tig00010533_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2620943

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  3  of  12  ( 1372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492770--492856	2	43.5	2	100	0	174	49	0	0	50	1.00
496229--496293	22	3.0	22	93	0	103	10	24	44	20	1.83
496296--496377	19	4.3	18	75	9	65	26	26	28	18	1.98
496315--496377	9	6.7	9	78	8	63	26	28	28	15	1.96
496315--496397	38	2.2	39	82	6	98	28	26	27	16	1.97
500923--500979	25	2.3	25	84	0	69	42	3	8	45	1.52
511314--511343	12	2.5	12	94	0	51	33	26	13	26	1.93
520826--520924	21	4.8	20	75	6	81	37	23	18	21	1.94
520891--521161	20	13.5	20	84	2	292	39	24	16	19	1.92
520910--521161	101	2.5	101	83	7	282	38	25	16	19	1.92
521844--521890	24	2.0	24	87	8	69	25	14	21	38	1.92
523633--523718	42	2.0	42	88	4	129	27	16	20	34	1.94
524002--524030	2	14.5	2	100	0	58	48	0	0	51	1.00
525147--525314	81	2.1	81	97	0	318	38	18	19	24	1.93
527465--527555	45	2.0	45	100	0	182	42	2	26	28	1.67
533520--533569	17	2.9	17	90	0	73	30	16	8	46	1.75
542899--543025	64	2.0	64	90	0	200	36	22	8	33	1.85
544401--544455	13	4.2	13	75	13	58	49	12	3	34	1.59
544441--544539	33	3.0	33	94	1	164	45	15	7	32	1.73
544534--544573	21	1.9	21	94	0	71	47	7	15	30	1.72
546854--546900	12	3.7	12	81	15	58	17	19	17	46	1.84
546853--546892	15	2.9	14	85	14	57	20	17	15	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
549621--549696	31	2.5	28	75	21	73	55	6	6	31	1.51
550064--550123	31	1.9	31	89	0	93	46	10	13	30	1.75
550778--550802	7	3.6	7	100	0	50	88	0	12	0	0.53
559240--559442	71	2.9	71	87	3	284	40	29	7	22	1.81
561536--561810	121	2.3	121	82	1	336	44	8	16	31	1.77
563502--563536	18	1.9	18	88	0	52	31	20	20	28	1.97
565048--565261	111	1.9	111	97	0	401	45	10	7	37	1.65
565333--565371	18	2.2	18	90	4	62	64	2	2	30	1.21
566662--566744	40	2.0	42	90	4	134	42	4	2	50	1.36
569456--569489	18	1.9	18	88	5	52	14	2	8	73	1.19
569571--569626	27	2.1	27	93	0	94	50	5	14	30	1.65
573422--573477	27	2.1	27	93	0	94	30	5	8	55	1.53
574192--574769	286	2.0	286	100	0	1156	30	20	23	25	1.98
579356--579410	27	2.2	25	84	15	69	56	12	9	21	1.64
581673--581812	60	2.3	60	74	16	137	43	17	5	32	1.73
582052--582153	54	1.9	53	89	2	159	40	12	7	39	1.72
586857--586895	19	2.0	20	85	9	55	56	5	10	28	1.54
590695--590720	3	8.7	3	100	0	52	0	30	0	69	0.89
593170--593217	16	3.0	16	87	0	69	35	6	22	35	1.80
598597--598671	2	38.0	2	94	2	134	48	0	1	50	1.09
607774--607914	54	2.5	57	78	13	141	48	2	2	46	1.28
607829--607914	22	4.2	21	69	22	58	48	3	1	46	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607844--607934	38	2.5	38	82	8	109	49	3	1	46	1.25
607922--607951	15	2.0	15	93	0	51	56	0	3	40	1.16
608130--608191	23	2.6	23	82	12	63	51	1	0	46	1.10
611292--611342	21	2.5	20	78	9	57	39	11	1	47	1.52
612324--612361	18	2.1	18	85	9	51	34	13	0	52	1.40
612415--612465	21	2.5	20	81	9	57	45	0	5	49	1.26
614224--614267	19	2.3	19	80	7	54	40	13	15	29	1.86
615117--615202	29	3.0	29	94	0	145	16	36	26	20	1.94
615222--615329	33	3.3	33	85	0	108	14	34	25	25	1.94
615610--615668	25	2.4	25	97	0	109	20	47	18	13	1.82
617363--617387	3	8.3	3	100	0	50	68	32	0	0	0.90
619801--619828	3	9.3	3	100	0	56	0	0	32	67	0.91
627650--627787	5	27.4	5	92	7	235	40	0	0	59	0.97
629163--629215	21	2.5	21	81	6	72	20	26	18	33	1.96
629205--629256	21	2.5	21	87	3	70	38	17	23	21	1.93
629287--629373	39	2.2	40	89	2	131	24	29	19	26	1.98
629287--629378	20	4.7	20	89	5	125	26	28	19	26	1.99
629930--629983	24	2.2	24	90	0	81	25	16	16	40	1.89
632485--632539	19	2.8	19	83	2	65	38	21	21	18	1.94
632446--632539	20	4.7	20	71	13	68	35	23	20	21	1.96
632572--632646	19	4.2	19	70	19	63	14	21	21	42	1.88
632582--632647	19	3.7	19	75	19	79	12	22	19	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632754--632790	14	2.6	14	86	0	56	45	18	0	35	1.50
634141--634207	21	3.2	21	66	6	55	20	19	35	23	1.95
634180--634259	42	1.9	42	84	0	106	23	17	37	21	1.94
636315--636353	20	2.0	20	100	0	78	51	15	23	10	1.73
637520--637638	30	4.0	30	92	1	177	31	26	21	21	1.98
637634--637701	31	2.2	31	81	5	84	33	17	19	29	1.95
638426--638470	21	2.1	21	83	0	54	13	24	31	31	1.93
639325--639459	20	6.7	20	80	3	153	20	20	18	40	1.91
639325--639459	41	3.3	41	91	1	209	20	20	18	40	1.91
639327--639459	61	2.2	61	83	2	169	19	21	18	40	1.91
639449--639501	21	2.5	22	81	6	74	35	16	24	22	1.95
640555--640628	31	2.4	31	93	0	130	24	18	13	43	1.86
642669--642702	18	1.9	18	88	5	52	29	2	2	64	1.22
643338--643385	21	2.3	22	82	7	55	25	0	22	52	1.48
643844--643900	2	28.5	2	96	0	105	49	0	1	49	1.11
644259--646036	294	6.0	294	94	0	3029	24	8	17	49	1.73
646121--646153	16	2.1	16	88	5	50	63	9	0	27	1.24
650390--650717	20	16.2	20	77	13	300	41	22	19	15	1.89
650390--650717	40	8.1	40	85	7	342	41	22	19	15	1.89
650813--650971	6	26.5	6	100	0	318	33	50	16	0	1.45
651472--651616	6	24.5	6	98	0	267	0	16	51	31	1.45
651712--651924	42	5.2	42	78	10	244	17	19	21	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651786--652000	82	2.7	82	94	2	364	15	19	20	44	1.86
651848--652000	62	2.5	60	82	7	168	15	18	19	45	1.85
651712--652000	20	14.2	20	71	13	155	16	19	21	42	1.89
653157--653183	2	13.5	2	100	0	54	48	0	0	51	1.00
656078--656107	14	2.1	14	100	0	60	23	13	13	50	1.77
656330--656374	17	2.6	17	78	0	54	33	0	0	66	0.92
656328--656361	12	2.8	12	86	13	52	32	0	0	67	0.91
660075--660119	22	2.0	22	87	8	65	8	64	15	11	1.49
669027--669069	21	2.1	20	83	12	52	58	0	0	41	0.98
670810--670849	2	20.0	2	100	0	80	50	0	0	50	1.00
672525--672569	21	2.1	21	84	15	58	75	0	2	22	0.91
672536--672667	9	14.0	9	72	21	53	73	1	3	21	1.05
672537--672576	16	2.5	17	84	11	50	80	0	0	20	0.72
672596--672629	13	2.8	12	91	8	52	76	5	0	17	0.98
672587--672745	46	3.4	46	76	14	117	66	3	1	28	1.14
672608--672744	50	2.8	50	82	11	142	64	2	1	30	1.17
672633--672762	40	3.1	40	77	17	122	65	3	0	30	1.13
672692--672742	19	2.5	21	78	9	61	62	3	0	33	1.13
673311--673418	37	2.9	37	91	0	162	33	11	12	42	1.79
674133--674160	14	2.0	14	100	0	56	21	42	28	7	1.79
674131--674238	33	3.2	33	89	1	144	25	29	33	12	1.92
674131--674251	33	3.6	33	88	3	118	25	28	34	10	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674277--674346	36	1.9	36	91	0	113	25	30	30	14	1.95
678850--678909	30	2.0	30	100	0	120	36	23	6	33	1.81
680198--680230	17	2.1	16	88	11	50	72	3	0	24	0.98
680185--680262	22	3.8	21	72	19	65	58	1	0	39	1.06
680223--680255	16	2.0	17	94	5	59	54	0	0	45	0.99
683534--683594	31	2.0	31	93	0	104	40	16	22	19	1.90
695205--695262	21	2.7	22	80	20	70	50	1	1	46	1.22
695248--695292	19	2.4	19	88	7	65	37	0	2	60	1.09
701736--701786	25	2.0	25	96	0	93	27	23	11	37	1.90
701843--701966	19	7.3	17	69	29	79	37	4	7	50	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12