genome.fa.s4693.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004693.1 Hibiscus syriacus cultivar Beakdansim tig00010533_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2620943

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  1  of  12  ( 1372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--14135	7	2048.4	7	94	4	19545	38	42	4	14	1.66
14133--14466	7	48.0	7	98	1	654	14	56	28	0	1.38
14474--14616	17	8.2	18	72	15	77	51	24	2	22	1.59
14542--14637	26	3.7	26	77	13	90	55	19	3	21	1.57
14554--14636	9	9.6	9	73	5	64	57	20	2	19	1.51
14677--14906	47	4.8	46	73	12	140	46	26	3	22	1.69
14713--14906	10	20.0	10	75	5	157	46	26	4	22	1.70
15431--15635	99	2.1	99	97	0	383	28	11	15	43	1.82
25121--25147	2	13.5	2	100	0	54	48	0	0	51	1.00
25175--25266	43	2.2	43	85	11	122	28	5	2	64	1.27
25171--25267	40	2.5	39	80	9	108	27	5	2	64	1.25
25238--25311	16	4.7	15	75	14	60	35	2	1	60	1.19
25314--25345	15	2.1	15	94	0	55	12	9	0	78	0.97
25339--25396	14	3.8	15	72	24	50	17	3	6	72	1.21
25315--25368	21	2.6	20	80	13	56	14	5	5	74	1.19
25341--25418	32	2.4	32	81	8	95	19	2	6	71	1.19
37945--37986	2	21.5	2	95	4	77	47	0	0	52	1.00
38033--38064	15	2.1	15	100	0	64	12	6	0	81	0.87
38035--38087	21	2.5	21	84	6	63	15	3	5	75	1.13
38060--38137	32	2.4	32	79	12	88	20	2	6	70	1.21
38191--38250	28	2.1	29	81	3	68	16	13	1	68	1.29
41274--41317	14	3.1	14	90	0	70	52	4	0	43	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41324--41381	30	1.9	31	96	3	109	60	1	0	37	1.07
41840--41911	28	2.6	28	79	16	69	52	27	0	19	1.46
41831--41946	21	5.6	21	71	6	58	48	29	0	22	1.51
43135--43182	23	2.1	23	88	0	69	35	12	18	33	1.89
43600--43672	23	3.2	23	88	0	92	42	20	4	32	1.71
43817--43883	30	2.2	29	82	10	73	43	0	4	52	1.21
43249--45592	429	5.5	430	97	0	4417	38	12	7	40	1.71
44024--44077	23	2.5	20	75	18	54	42	18	1	37	1.61
44039--44101	23	2.7	23	92	0	99	38	20	4	36	1.74
44246--44312	30	2.2	29	82	10	73	43	0	4	52	1.21
44472--44530	23	2.6	23	88	0	82	37	18	6	37	1.78
44676--44742	30	2.2	29	82	10	73	43	0	4	52	1.21
44888--44959	23	3.2	22	88	4	99	38	22	4	34	1.73
43249--45592	859	2.7	860	97	0	4417	38	12	7	40	1.71
45327--45389	23	2.7	23	92	0	99	38	20	4	36	1.74
45811--45897	39	2.2	39	95	0	156	17	13	20	48	1.81
46156--46192	18	2.1	18	89	0	56	51	10	8	29	1.65
46630--46692	23	2.7	23	92	0	99	38	20	4	36	1.74
47038--47103	25	2.6	25	80	0	87	42	13	9	34	1.76
49570--50062	183	2.7	183	97	0	916	33	17	15	33	1.91
51564--51604	9	4.6	9	84	0	55	21	34	4	39	1.75
53085--54256	200	5.9	199	97	0	2089	30	17	14	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54375--54423	19	2.6	19	93	0	80	57	10	2	30	1.43
56214--56279	33	2.0	33	87	0	96	22	46	0	30	1.52
56313--56356	21	2.1	21	91	0	70	15	31	11	40	1.83
58565--58607	20	2.3	18	85	14	61	23	16	9	51	1.73
58570--58616	20	2.4	19	82	10	67	21	17	8	53	1.70
58751--58796	20	2.3	19	85	10	65	19	17	10	52	1.74
58845--60019	228	5.1	229	96	1	2132	38	8	7	44	1.63
58845--60019	457	2.6	456	96	1	2112	38	8	7	44	1.63
65047--65087	8	5.2	8	82	5	57	34	0	29	36	1.58
65160--66426	128	9.9	128	94	0	2241	23	25	19	32	1.98
66827--66926	33	3.0	34	82	2	130	39	2	4	55	1.30
67445--67580	21	6.5	21	94	3	204	20	26	34	18	1.96
67584--67631	21	2.3	21	85	0	60	22	12	39	25	1.89
69370--69413	19	2.4	19	81	7	56	54	2	0	43	1.12
69357--69444	17	5.1	18	70	21	55	59	2	0	38	1.10
69385--69456	34	2.1	34	82	10	85	63	5	0	30	1.17
78673--78769	45	2.2	45	84	3	124	15	38	13	32	1.86
85655--85710	18	3.1	18	72	12	60	25	16	8	50	1.74
87775--87846	36	2.0	36	88	0	108	31	25	19	23	1.98
89772--89827	18	3.0	19	80	15	80	21	21	10	46	1.81
94492--94594	42	2.5	41	85	3	136	32	28	11	28	1.92
94678--94727	26	1.9	26	87	0	73	34	14	12	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104752--104824	32	2.3	32	97	0	137	32	8	17	41	1.79
107696--107757	29	2.1	31	87	6	92	20	22	8	48	1.76
108829--108927	30	3.5	28	75	15	96	18	24	12	45	1.83
108847--108962	26	4.4	25	76	18	92	18	24	8	49	1.75
108857--108941	29	3.0	29	77	20	108	21	22	10	45	1.82
108823--108962	55	2.5	55	82	4	172	19	23	9	47	1.78
109516--109558	22	2.0	22	86	9	61	41	13	4	39	1.66
111906--111963	18	3.2	18	90	4	64	36	1	62	0	1.06
111920--111967	6	8.2	6	97	2	89	31	0	68	0	0.90
112101--112134	17	2.0	17	88	11	52	5	17	0	76	0.98
114705--114764	23	2.6	23	86	7	77	35	21	11	31	1.90
123148--123333	93	2.0	93	98	0	363	33	20	19	25	1.96
123327--123363	14	2.6	14	86	0	56	21	16	27	35	1.94
126414--126929	210	2.4	209	78	6	522	29	21	15	33	1.94
135222--135248	14	1.9	14	100	0	54	33	0	29	37	1.58
136463--136625	71	2.4	67	79	6	148	40	6	17	34	1.76
155259--155306	23	2.1	23	88	0	69	35	12	18	33	1.89
156033--156069	18	2.1	18	89	0	56	51	10	5	32	1.60
156273--156337	23	2.8	23	85	0	85	40	16	7	35	1.78
156696--156747	23	2.3	22	90	6	77	44	19	1	34	1.62
156706--156768	23	2.7	23	90	0	90	38	19	6	36	1.77
159326--159996	184	3.7	184	96	0	1254	34	15	14	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160455--161424	200	4.9	199	97	0	1823	32	14	15	37	1.88
160455--161424	399	2.4	399	97	0	1843	32	14	15	37	1.88
161506--161550	19	2.4	19	92	0	72	57	8	2	31	1.41
163340--163405	33	2.0	33	87	0	96	24	45	1	28	1.62
165522--165568	23	2.0	23	84	8	60	27	8	14	48	1.73
165708--165754	20	2.4	19	79	10	58	19	17	8	55	1.67
165875--165920	20	2.3	20	89	10	76	17	17	10	54	1.70
172766--172937	60	2.8	60	78	6	141	32	19	5	42	1.75
173077--173232	60	2.6	60	80	1	161	40	3	21	33	1.72
176453--176480	10	2.8	10	100	0	56	14	10	21	53	1.70
176699--176815	10	10.4	10	72	23	65	16	9	13	60	1.58
176699--176815	33	3.4	33	77	13	128	16	9	13	60	1.58
176698--176833	23	6.0	21	72	19	87	14	11	13	60	1.59
181750--181819	34	2.1	32	89	5	104	21	31	15	31	1.95
182102--182143	21	2.0	21	90	0	66	26	26	21	26	1.99
182342--182433	32	3.0	31	93	6	161	43	17	6	32	1.75
182592--182639	23	2.1	23	96	0	87	33	2	8	56	1.41
185259--185328	34	2.1	32	89	5	104	21	31	15	31	1.95
185611--185652	21	2.0	21	95	0	75	26	28	21	23	1.99
185758--185819	19	3.3	19	93	0	88	35	12	9	41	1.76
185889--185980	32	3.0	31	93	6	161	43	17	6	32	1.75
188158--188240	39	2.1	40	88	2	123	32	19	15	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188186--188341	41	3.8	40	71	9	127	31	17	16	34	1.92
188203--188373	83	2.1	83	80	6	186	33	18	15	32	1.92
188354--188447	41	2.3	41	87	3	127	32	10	19	37	1.86
188369--188460	41	2.2	41	86	1	121	38	11	16	33	1.85
189582--189649	22	3.1	22	91	0	91	32	11	8	47	1.71
190107--190406	41	7.3	40	70	16	145	31	22	16	30	1.95
190065--190400	81	4.1	79	77	6	298	32	22	15	30	1.94
192070--192132	2	31.5	2	100	0	126	49	0	0	50	1.00
192635--192693	24	2.5	24	75	2	66	20	20	22	37	1.95
193763--193824	30	2.1	30	96	0	115	30	12	8	48	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12