genome.fa.s520.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000520.1 Hibiscus syriacus cultivar Beakdansim tig00000991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1956684

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  10  of  11  ( 1212 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1690563--1690842	151	1.9	151	90	3	447	37	25	20	17	1.94
1690830--1690863	12	2.8	12	100	0	68	41	26	26	5	1.78
1693034--1693067	16	2.1	16	89	10	52	32	5	0	61	1.20
1693017--1693127	39	2.8	39	82	10	145	33	13	2	50	1.56
1693155--1693202	25	1.9	25	87	8	71	35	0	0	64	0.94
1693277--1693310	12	2.8	12	90	0	50	41	0	0	58	0.98
1693414--1693462	16	3.1	15	75	13	53	34	18	10	36	1.85
1694654--1694694	14	3.0	14	82	10	50	63	2	0	34	1.08
1700437--1700494	21	2.9	21	92	5	93	25	18	31	24	1.98
1700454--1700620	65	2.5	66	78	11	191	25	16	25	32	1.96
1700934--1701040	52	2.1	52	94	0	187	32	27	1	38	1.68
1701122--1701146	2	12.5	2	100	0	50	52	0	0	48	1.00
1703316--1703373	23	2.6	23	78	5	66	22	25	25	25	2.00
1708938--1708983	19	2.4	19	96	0	83	26	15	32	26	1.95
1711261--1711311	20	2.6	19	75	6	57	33	15	25	25	1.95
1711273--1711310	20	1.9	20	88	0	58	31	10	31	26	1.90
1714297--1714332	2	18.0	2	100	0	72	50	0	0	50	1.00
1724237--1724329	31	3.1	28	77	16	98	37	2	2	58	1.22
1724270--1724375	3	33.7	3	75	12	56	32	3	1	62	1.24
1724245--1724347	33	3.1	34	77	14	110	35	3	1	58	1.28
1724508--1724572	26	2.5	26	85	7	78	13	3	6	76	1.09
1724495--1724603	11	9.5	11	69	16	53	17	3	5	73	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1724533--1724661	18	6.8	18	70	16	57	18	6	4	70	1.26
1735821--1735992	65	2.8	62	84	7	199	36	20	17	25	1.94
1736079--1736235	64	2.4	65	93	4	264	34	26	16	22	1.95
1736117--1736231	32	3.6	32	72	19	114	34	26	16	21	1.95
1737864--1737996	3	43.0	3	70	18	62	31	3	1	63	1.21
1737880--1737986	28	3.9	28	77	17	100	33	4	1	59	1.29
1737864--1737989	21	6.0	20	70	18	78	32	3	1	61	1.23
1738070--1738208	19	7.4	18	69	14	77	15	5	5	74	1.19
1739878--1739906	2	14.5	2	100	0	58	51	0	0	48	1.00
1740101--1740152	23	2.3	23	87	9	79	32	7	0	59	1.26
1741266--1741303	19	2.0	20	84	5	51	52	5	2	39	1.38
1742252--1742356	39	2.7	37	81	14	131	37	19	2	40	1.66
1742395--1742463	35	2.0	35	82	0	84	39	1	1	57	1.16
1742823--1743028	20	10.1	21	67	8	93	20	19	24	35	1.96
1742912--1743025	20	5.6	20	73	8	113	15	22	22	38	1.92
1742915--1743094	41	4.4	42	86	7	244	17	21	22	38	1.93
1743017--1743088	22	3.4	22	73	11	87	18	19	25	37	1.94
1743038--1743103	19	3.3	19	72	12	69	18	19	21	40	1.91
1743188--1743236	6	8.5	6	97	2	84	30	53	16	0	1.43
1743734--1743809	6	13.5	6	98	1	117	0	17	53	28	1.43
1743921--1743972	20	2.6	20	90	0	77	44	23	23	9	1.82
1743941--1744127	41	4.4	41	76	11	187	35	24	20	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1744018--1744082	20	3.2	20	73	2	67	35	29	18	16	1.93
1744032--1744098	20	3.3	19	69	8	53	41	28	19	10	1.84
1744267--1744325	25	2.3	26	85	5	75	40	5	0	54	1.23
1750010--1750134	23	5.6	22	77	7	137	24	27	24	24	2.00
1750010--1750130	44	2.8	44	96	2	217	23	26	24	24	2.00
1754260--1754620	55	6.6	55	88	2	198	32	22	16	29	1.95
1754308--1754752	55	8.3	55	86	6	547	32	23	15	28	1.95
1754644--1754732	45	2.0	45	95	4	162	38	23	16	21	1.93
1756140--1756267	7	18.7	7	71	18	83	10	16	0	72	1.15
1756125--1756307	7	24.1	8	72	18	76	9	14	0	75	1.08
1756125--1756266	37	4.1	35	76	16	129	9	16	0	73	1.13
1756219--1756307	8	10.1	9	74	23	66	8	11	0	79	0.93
1756236--1756307	27	2.9	25	77	22	80	9	9	0	80	0.91
1756125--1756283	44	3.6	43	72	14	128	9	15	0	74	1.11
1761927--1761960	16	2.1	16	100	0	68	23	35	14	26	1.94
1763461--1763504	18	2.4	18	88	3	61	52	9	11	27	1.67
1765932--1766029	45	2.1	47	86	5	137	38	19	13	28	1.89
1784048--1784086	20	2.0	20	94	0	69	56	17	0	25	1.41
1787832--1787878	24	2.0	24	86	0	67	44	0	0	55	0.99
1788022--1788130	24	4.7	23	71	17	73	51	1	1	44	1.22
1788027--1788110	34	2.4	35	75	15	86	52	2	1	44	1.21
1796228--1796520	143	2.0	144	98	1	572	30	15	19	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1796551--1796763	113	1.9	113	99	0	417	47	12	19	20	1.81
1797064--1797287	117	1.9	117	84	3	299	47	6	15	30	1.71
1808838--1808872	17	2.0	18	88	5	54	45	5	20	28	1.73
1815640--1815680	21	2.0	20	85	4	55	31	0	43	24	1.54
1816364--1816433	23	3.2	22	86	6	88	20	25	30	24	1.99
1825807--1825851	20	2.3	21	77	14	51	40	0	17	42	1.50
1827326--1827364	19	2.1	19	85	9	53	46	7	17	28	1.76
1827416--1827448	12	2.6	13	90	4	50	57	0	21	21	1.41
1827815--1828515	46	15.5	46	82	5	833	41	13	20	23	1.88
1832207--1832698	46	10.7	46	86	1	664	42	13	20	23	1.88
1838798--1838837	21	1.9	21	89	0	62	25	40	25	10	1.86
1842221--1842602	46	8.3	46	87	2	493	41	13	20	24	1.88
1842220--1842610	138	2.8	138	87	3	554	41	13	20	24	1.88
1846987--1847031	20	2.3	20	81	14	58	40	0	20	40	1.52
1848683--1848735	19	2.8	19	82	2	63	49	3	13	33	1.60
1855229--1855253	12	2.1	12	100	0	50	40	16	8	36	1.77
1855300--1855358	21	2.7	22	85	10	77	22	5	23	49	1.70
1855712--1855794	43	2.0	42	83	7	105	39	18	14	27	1.89
1856777--1856856	35	2.3	35	84	0	97	42	23	0	33	1.55
1856906--1857195	148	2.0	148	90	0	463	36	6	10	46	1.66
1857696--1857774	35	2.2	36	86	8	108	32	0	21	45	1.52
1861122--1861191	33	2.2	33	80	19	87	74	0	4	21	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1862292--1862320	14	2.1	14	100	0	58	79	0	6	13	0.93
1862360--1862531	33	5.2	32	70	22	104	44	5	3	46	1.42
1862385--1862627	36	6.8	34	74	17	137	44	4	4	46	1.45
1862396--1862640	38	6.8	37	81	12	221	44	4	4	45	1.46
1865021--1865066	22	2.0	23	95	4	85	34	17	21	26	1.95
1867823--1867878	24	2.3	25	76	14	64	32	1	7	58	1.35
1871954--1871993	17	2.4	18	80	16	50	40	0	0	60	0.97
1872225--1872253	14	2.1	14	93	6	51	37	10	6	44	1.65
1880430--1880478	20	2.5	20	100	0	98	28	20	24	26	1.99
1880989--1881065	22	3.5	22	83	0	100	18	20	25	35	1.95
1884817--1884973	63	2.5	64	82	7	169	36	22	18	22	1.95
1885523--1885595	22	3.3	22	80	0	83	19	23	27	30	1.98
1892071--1892122	20	2.6	21	81	9	72	26	32	15	25	1.95
1892111--1892232	20	6.1	20	72	14	90	34	21	20	23	1.97
1892353--1892406	22	2.5	22	87	0	81	24	40	14	20	1.90
1892665--1892707	20	2.2	20	87	4	61	46	25	16	11	1.80
1892704--1892745	20	2.1	20	86	0	57	14	19	21	45	1.85
1896825--1896874	18	2.7	19	93	6	93	30	10	24	36	1.88
1896863--1896913	20	2.5	20	93	0	84	19	17	21	41	1.91
1896937--1896990	20	2.7	21	82	8	76	27	12	29	29	1.94
1898049--1898090	13	3.2	13	83	16	59	30	4	19	45	1.71
1898184--1898230	12	3.7	13	80	13	62	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1898178--1898230	24	2.1	24	83	16	63	41	1	0	56	1.10
1902971--1903060	35	2.6	35	79	13	130	32	20	8	38	1.83
1904478--1904549	18	4.0	18	90	0	108	29	30	19	20	1.97
1907723--1908075	177	2.0	174	96	3	647	30	11	25	32	1.91
1911951--1912005	15	3.7	15	82	0	74	41	5	5	47	1.49
1911951--1912009	30	2.0	30	96	0	109	40	5	10	44	1.60
1913693--1913734	14	3.0	14	85	0	57	26	7	28	38	1.82
1916943--1916977	2	17.5	2	100	0	70	48	0	0	51	1.00
1917149--1917396	81	3.1	81	91	0	406	24	22	13	39	1.91
1919052--1919136	27	3.1	27	64	18	68	27	17	20	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11