genome.fa.s520.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000520.1 Hibiscus syriacus cultivar Beakdansim tig00000991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1956684

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1212 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198664--199037	94	4.1	93	93	2	587	21	11	18	47	1.81
199154--199191	20	1.9	20	100	0	76	50	28	15	5	1.66
199197--199317	19	6.8	19	69	19	91	10	22	21	45	1.82
199221--199275	14	3.6	14	73	21	56	9	23	21	45	1.80
199200--199293	33	2.8	33	96	0	170	9	23	22	44	1.82
201181--201216	14	2.6	14	95	0	63	33	0	22	44	1.53
201323--201407	19	4.7	19	76	16	83	45	22	18	12	1.83
201339--201402	33	1.9	33	90	6	103	46	25	17	10	1.80
201339--201411	19	4.1	19	76	20	86	47	24	16	10	1.78
201411--201530	19	6.8	18	71	18	76	12	23	20	44	1.85
201417--201510	33	2.8	33	95	0	161	11	23	19	45	1.83
201483--201537	20	2.8	19	83	2	65	18	21	21	38	1.94
203987--204038	24	2.2	24	82	0	59	36	21	19	23	1.95
204871--204981	20	5.5	21	88	2	149	24	19	18	36	1.94
204871--205020	20	7.3	20	81	5	131	26	19	21	32	1.97
204977--205019	21	2.0	21	86	4	59	34	16	25	23	1.95
205235--205289	16	3.5	16	87	2	76	10	16	65	7	1.45
207251--207300	17	3.1	17	77	11	50	50	4	0	46	1.20
210795--210852	24	2.4	24	77	5	64	20	27	12	39	1.88
216133--216185	21	2.7	19	73	21	54	47	9	11	32	1.71
216851--216967	61	1.9	61	86	8	168	39	17	10	32	1.84
217731--217764	12	3.0	11	87	8	50	44	2	2	50	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226326--226366	22	1.9	21	90	5	64	70	4	0	24	1.06
232038--232091	23	2.3	23	87	6	74	50	0	0	50	1.00
232043--232091	12	4.2	12	78	5	55	46	0	0	53	1.00
232047--232108	23	2.7	24	82	7	67	45	1	0	53	1.10
232910--232955	15	2.9	16	78	18	60	54	0	0	45	0.99
232910--232948	16	2.5	16	84	16	55	53	0	0	46	1.00
234738--234775	18	2.1	18	95	0	67	15	5	28	50	1.66
238090--238148	30	2.0	30	83	6	75	42	6	16	33	1.75
239261--239304	17	2.3	19	77	22	56	40	0	29	29	1.57
239271--239304	17	2.0	17	100	0	68	35	0	35	29	1.58
239811--239867	28	2.0	28	83	6	71	43	26	15	14	1.85
241927--241976	18	2.8	18	90	0	73	20	18	30	32	1.96
241984--242023	21	1.9	21	84	0	53	20	20	25	35	1.96
245083--245159	24	3.6	22	75	20	67	29	19	25	24	1.98
256958--256994	18	2.1	18	100	0	74	37	13	21	27	1.91
258350--258387	20	1.9	20	88	0	58	31	13	31	23	1.93
258237--258431	95	2.1	95	81	7	227	31	16	25	26	1.96
258427--258471	22	2.0	23	86	4	65	33	13	24	28	1.93
260655--260776	45	2.7	45	88	0	172	25	18	18	36	1.94
261600--261818	45	4.9	45	79	6	246	40	9	21	28	1.84
261600--261861	90	2.9	89	75	8	244	41	8	20	30	1.81
267814--267859	24	1.9	24	81	0	56	67	8	10	13	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274688--274756	13	5.2	13	70	25	54	82	11	0	5	0.83
274692--274756	18	3.6	18	78	12	62	83	12	0	4	0.80
274699--274754	29	1.9	29	92	0	94	82	14	0	3	0.81
274698--274755	6	9.8	6	81	3	64	82	13	0	3	0.79
279921--280181	135	1.9	133	98	1	504	25	28	16	29	1.96
282560--282632	37	2.0	37	97	0	137	45	19	4	31	1.69
286501--286547	3	16.0	3	91	4	78	65	0	2	31	1.04
291089--291207	59	2.0	59	93	3	204	34	21	9	35	1.85
293671--293725	23	2.4	23	93	0	92	18	25	40	16	1.91
293852--293910	3	18.7	3	89	3	73	59	0	0	40	0.97
293854--293911	18	3.0	19	87	10	82	58	0	0	41	0.98
294093--294496	73	5.5	73	92	1	639	31	20	21	26	1.98
294977--295032	20	2.7	20	88	5	85	33	14	17	33	1.90
296314--296461	75	2.0	75	82	2	181	28	20	18	32	1.96
299292--299348	9	6.1	9	85	6	60	0	15	0	84	0.63
299303--299334	7	4.9	7	85	14	50	0	9	0	90	0.45
302051--302075	8	3.1	8	100	0	50	76	0	12	12	1.04
303802--303848	20	2.3	20	92	0	76	42	4	12	40	1.63
303811--303850	20	2.0	20	100	0	80	40	5	10	45	1.60
304290--304693	145	2.7	147	81	8	406	45	7	8	39	1.63
304894--305180	148	1.9	148	82	8	361	38	6	6	48	1.57
305576--305617	19	2.2	19	86	4	57	61	0	2	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308674--308709	2	18.0	2	100	0	72	50	0	0	50	1.00
310788--310834	22	2.2	21	82	17	53	48	0	0	51	1.00
315333--315380	2	24.0	2	100	0	96	50	0	0	50	1.00
317025--317059	18	2.0	18	94	5	63	34	5	5	54	1.48
328924--328955	13	2.4	14	94	5	57	59	3	0	37	1.13
329142--329210	23	3.0	23	89	0	111	31	26	26	15	1.96
329207--329250	23	2.0	23	81	4	54	38	27	15	18	1.91
331207--331245	19	2.1	19	85	0	51	53	10	12	23	1.69
331767--331792	6	4.3	6	100	0	52	34	0	15	50	1.45
345371--345699	20	16.5	20	84	5	396	35	25	18	20	1.95
346380--346426	24	2.0	24	87	8	69	25	14	21	38	1.92
348908--349328	19	23.4	19	85	12	595	46	17	20	14	1.83
348975--349328	109	3.3	107	93	4	570	46	17	20	14	1.83
349357--349458	19	5.6	19	85	12	151	14	23	17	44	1.86
349565--349601	14	2.6	14	91	0	65	45	21	0	32	1.52
351500--351634	19	7.6	19	76	16	137	45	24	19	10	1.81
351556--351612	14	3.7	14	77	20	60	45	24	21	8	1.80
351537--351629	33	2.8	33	98	0	177	47	22	20	9	1.79
351500--351634	52	2.5	54	75	18	131	45	24	19	10	1.81
351630--351758	19	7.3	19	75	17	125	8	17	28	45	1.77
351630--351721	33	2.8	33	93	3	150	7	18	28	45	1.76
351802--352458	93	7.1	93	98	1	1275	46	18	12	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351802--352458	185	3.6	185	99	0	1296	46	18	12	22	1.83
354164--354253	14	5.7	14	74	23	81	42	23	25	8	1.83
354156--354270	33	3.5	33	95	0	212	45	20	24	9	1.81
354163--354275	19	6.8	18	72	23	88	43	22	24	9	1.83
354287--354343	14	3.7	14	72	20	51	8	22	22	45	1.80
354271--354363	33	2.8	33	90	1	132	8	21	23	46	1.79
354298--354382	20	4.6	19	76	16	90	10	22	20	47	1.80
354462--354532	33	2.2	33	92	0	115	47	18	22	11	1.80
354714--354768	22	2.5	22	81	0	74	20	16	40	23	1.91
354914--355106	20	9.6	20	82	5	219	19	19	25	35	1.95
354914--355106	60	3.2	60	83	0	251	19	19	25	35	1.95
355162--355213	20	2.6	20	96	0	95	21	13	26	38	1.90
358632--358749	3	39.3	3	100	0	236	33	0	0	66	0.92
358795--358839	20	2.2	20	96	0	81	17	33	4	44	1.69
358878--358926	2	24.5	2	100	0	98	51	0	0	48	1.00
362337--362411	29	2.7	28	78	15	68	77	5	14	2	1.06
362338--362429	17	5.4	17	74	17	64	76	5	16	2	1.08
362380--362411	13	2.3	15	89	10	50	84	6	9	0	0.78
362363--362428	33	2.0	33	88	5	98	77	7	13	1	1.05
363668--364426	120	6.3	120	86	2	887	32	24	17	25	1.97
364435--364723	46	6.7	41	72	16	144	24	31	19	23	1.98
364441--364689	46	5.7	45	75	13	214	25	32	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364426--364727	129	2.3	129	88	3	428	24	32	19	23	1.97
364613--364685	25	3.1	25	64	22	66	23	32	17	26	1.97
364924--364949	3	8.7	3	100	0	52	34	0	0	65	0.93
365134--365421	146	2.0	146	81	0	342	34	19	24	21	1.96
365654--365720	29	2.3	28	80	12	73	14	8	14	61	1.56
365673--365777	30	3.6	29	77	11	79	18	10	13	58	1.63
366148--366503	179	2.0	178	98	0	694	35	15	6	43	1.72
370705--370884	96	1.9	91	84	5	234	54	4	11	29	1.56
370886--370952	29	2.3	29	82	2	82	56	10	8	23	1.61
373001--373039	17	2.3	17	86	8	53	74	2	2	20	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11