genome.fa.s520.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000520.1 Hibiscus syriacus cultivar Beakdansim tig00000991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1956684

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1212 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558679--558792	48	2.4	48	98	0	219	26	21	17	34	1.96
559896--559922	13	2.1	13	100	0	54	59	7	0	33	1.25
560983--561041	24	2.4	25	83	5	68	27	5	5	62	1.37
561809--561857	13	3.8	13	86	5	73	16	53	16	14	1.74
561900--561957	24	2.4	24	100	0	116	55	0	0	44	0.99
561942--561985	2	22.5	2	86	4	63	47	0	0	52	1.00
561983--562037	12	4.6	12	88	0	74	25	49	14	10	1.76
567863--567923	23	2.7	23	84	0	86	32	9	22	34	1.87
567904--568161	75	3.4	75	85	3	349	33	13	11	41	1.81
568103--568221	57	2.1	57	88	0	175	35	17	10	36	1.85
569167--569197	6	5.2	6	92	0	53	29	38	16	16	1.90
569580--569643	26	2.5	26	86	0	83	34	3	3	59	1.29
569672--569738	23	2.9	23	81	0	80	41	7	2	47	1.47
579057--579094	2	19.0	2	100	0	76	50	0	0	50	1.00
579617--579700	23	3.7	23	86	0	105	38	7	20	34	1.80
579691--579752	27	2.3	27	91	0	97	38	12	16	32	1.86
579755--579828	35	2.1	35	89	0	112	37	13	9	39	1.77
580622--580702	33	2.5	33	83	0	117	53	0	0	46	1.00
581317--581372	23	2.6	21	75	10	58	37	5	3	53	1.41
583441--583661	64	3.5	64	83	4	259	33	19	18	27	1.96
584414--584631	103	2.1	103	94	0	382	25	14	22	36	1.93
584648--584710	23	2.7	23	90	0	90	20	28	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589281--589501	64	3.5	64	82	6	234	33	19	19	27	1.96
590254--590471	103	2.1	103	95	0	391	26	14	22	36	1.92
598457--598494	14	2.7	15	84	12	53	36	2	0	60	1.11
598478--598516	16	2.6	14	81	18	51	41	0	0	58	0.98
598977--599097	13	8.5	13	71	24	59	55	3	1	39	1.26
598984--599098	44	2.6	44	98	0	221	53	3	1	41	1.28
598984--599098	14	8.0	13	77	18	113	53	3	1	41	1.28
599011--599081	20	3.3	20	68	21	63	53	4	2	39	1.35
600429--600478	21	2.4	21	100	0	100	42	20	12	26	1.86
604746--604778	2	16.5	2	93	0	57	48	3	0	48	1.17
605342--605456	28	4.1	27	77	9	90	18	6	1	73	1.15
605367--605456	5	18.4	5	70	17	64	21	3	2	73	1.09
605350--605431	22	3.6	22	75	18	71	19	7	1	71	1.16
605375--605425	18	2.9	18	78	18	54	21	3	1	72	1.11
608134--608299	83	2.0	82	96	1	305	40	17	22	19	1.91
618238--618320	5	17.0	5	72	12	57	20	3	2	73	1.10
618239--618285	18	2.6	18	76	6	51	23	4	2	70	1.16
620785--620843	22	2.7	21	81	5	73	18	23	32	25	1.97
625850--625889	21	1.9	21	89	0	62	10	25	40	25	1.86
625872--625932	20	2.9	21	87	7	79	18	26	34	21	1.96
632804--632843	21	1.9	21	85	10	55	35	7	2	55	1.42
637007--637060	20	2.8	20	94	2	92	24	5	16	53	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638526--638571	22	2.1	22	95	0	83	36	32	0	30	1.58
639864--639897	15	2.1	17	89	10	54	58	17	5	17	1.57
643659--644256	306	2.0	292	95	4	1061	36	17	18	27	1.93
646651--646879	115	2.0	114	99	0	449	42	26	15	15	1.87
647626--649142	503	3.0	508	94	1	2672	27	17	27	28	1.97
650017--650165	75	2.0	75	82	0	181	25	11	24	38	1.89
652872--652963	37	2.5	37	87	0	130	39	10	13	36	1.79
653393--653439	20	2.3	21	78	14	53	21	6	4	68	1.30
653428--653560	36	3.6	36	75	13	126	31	2	1	64	1.15
653818--653907	45	2.0	45	100	0	180	37	11	20	31	1.87
657621--658920	84	15.7	83	75	6	1064	30	24	19	25	1.98
657709--658185	248	1.9	244	82	4	589	31	24	18	26	1.97
657644--658981	165	8.1	163	80	5	1222	31	23	19	25	1.98
657621--658920	249	5.2	247	80	4	1241	30	24	19	25	1.98
659483--659590	37	2.9	37	95	0	189	41	14	11	32	1.81
660148--660187	2	20.0	2	100	0	80	50	0	0	50	1.00
660177--660257	35	2.3	35	83	12	103	32	2	1	64	1.15
670550--670609	30	2.0	30	93	0	102	23	35	25	16	1.95
670664--670728	30	2.2	30	91	0	103	24	35	24	15	1.94
670505--670741	119	2.0	118	99	0	465	27	24	23	23	2.00
670712--670754	19	2.3	19	87	0	59	23	25	34	16	1.95
680693--680719	6	4.5	6	100	0	54	51	0	33	14	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681062--681128	31	2.2	30	79	12	84	64	7	5	22	1.42
681281--681323	19	2.2	20	83	4	52	79	4	4	11	1.04
681832--681875	20	2.1	21	83	8	54	13	22	27	36	1.92
682671--682723	18	2.9	17	79	20	63	71	1	1	24	1.06
682779--682874	31	3.0	31	83	6	120	46	5	3	44	1.41
682821--682985	75	2.2	75	91	5	273	39	4	4	51	1.43
682873--683082	39	5.5	38	72	18	152	42	4	4	48	1.43
682842--683055	74	2.8	76	83	9	226	42	4	4	49	1.41
682920--683166	37	6.2	38	75	17	191	44	5	4	46	1.46
682839--683082	77	3.2	77	82	11	229	43	4	4	48	1.42
682914--683167	39	6.4	39	73	20	161	44	5	3	45	1.46
683793--684783	84	11.9	83	79	6	850	25	20	24	30	1.99
683793--684783	169	6.0	163	85	5	997	25	20	24	30	1.99
688243--688302	8	7.1	8	80	14	59	75	0	3	21	0.95
688152--688302	26	6.0	25	69	21	75	70	2	5	20	1.20
688266--688302	19	1.9	19	100	0	74	75	0	0	24	0.80
689779--689836	3	19.0	3	96	3	107	67	0	0	32	0.91
689841--689939	44	2.2	44	76	16	107	44	7	3	45	1.46
689988--690207	39	5.6	38	77	14	191	44	5	3	46	1.44
689979--690246	77	3.4	80	80	12	220	43	5	4	45	1.49
690070--690255	80	2.4	76	84	10	216	45	7	3	43	1.50
690070--690267	77	2.5	80	80	11	207	46	7	4	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692779--692867	29	3.1	29	85	0	124	17	40	28	13	1.88
692882--692907	10	2.6	10	100	0	52	19	50	19	11	1.77
692896--692961	33	2.0	33	93	0	114	27	37	19	15	1.92
693150--693185	11	3.2	11	84	7	54	22	22	19	36	1.95
693477--693533	27	2.2	26	84	9	71	33	1	15	49	1.55
693727--693766	21	1.9	21	100	0	80	27	0	15	57	1.38
696312--696359	14	3.6	14	81	16	66	50	16	0	33	1.46
696312--696359	25	1.9	25	95	0	87	50	16	0	33	1.46
696312--696412	14	7.7	13	72	16	57	48	14	0	35	1.51
696358--696572	11	18.2	11	67	21	55	46	13	0	39	1.50
696485--696572	21	4.3	21	64	18	60	45	14	0	39	1.45
696450--696523	14	5.4	14	66	23	50	44	16	0	39	1.47
696371--696685	60	5.4	60	88	8	465	45	14	0	39	1.49
696327--696685	120	3.1	116	87	8	497	46	13	0	38	1.48
698447--698600	30	5.1	30	87	2	211	11	18	46	24	1.81
698581--698667	29	3.0	29	84	0	120	14	29	39	16	1.88
698550--698667	58	2.0	60	88	3	177	12	26	41	19	1.87
705497--705567	31	2.3	31	85	0	88	39	12	21	26	1.89
707232--707583	175	2.0	177	98	1	690	35	12	11	40	1.80
707694--707758	31	2.1	31	85	5	87	29	23	12	35	1.91
707701--707767	31	2.2	31	86	5	100	20	28	16	34	1.95
718283--718871	297	2.0	297	96	0	1097	32	17	20	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
719542--719566	6	4.2	6	100	0	50	36	48	16	0	1.46
721560--721621	30	2.1	30	93	0	106	25	6	12	54	1.62
730171--730247	3	25.3	3	84	7	102	36	1	0	62	1.04
732232--732304	29	2.6	29	75	14	71	31	6	1	60	1.31
739146--739659	83	6.2	83	95	0	904	27	13	21	37	1.91
742750--743391	76	8.5	76	98	0	1205	21	20	21	36	1.95
743518--743591	3	24.3	3	83	8	96	36	1	0	62	1.04
747896--747971	3	25.0	3	83	2	98	36	0	1	61	1.04
763739--763805	34	1.9	34	82	14	84	47	19	11	20	1.81
763965--764052	32	2.7	32	87	5	115	35	30	7	26	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11