genome.fa.s5606.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005606.1 Hibiscus syriacus cultivar Beakdansim tig00013040_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3509357

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1295 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363419--363494	25	3.2	25	66	27	67	40	9	23	26	1.84
363379--363532	44	3.5	44	93	0	245	40	9	22	27	1.84
364123--364167	20	2.3	20	96	3	83	31	6	20	42	1.77
369434--369561	59	2.2	59	84	0	157	25	18	26	28	1.98
369627--369656	14	2.1	14	93	0	51	23	6	30	40	1.80
369684--369802	45	2.6	45	88	2	159	38	8	24	28	1.84
370902--371003	46	2.2	46	87	5	145	30	19	16	33	1.94
370838--370960	64	1.9	64	81	6	151	33	20	15	30	1.94
373846--373899	22	2.7	18	77	22	63	42	1	0	55	1.10
373855--373907	23	2.3	23	93	3	90	50	1	0	47	1.12
376319--376360	6	7.0	6	78	10	50	47	0	0	52	1.00
376303--376356	24	2.3	24	84	6	76	48	0	0	51	1.00
376308--376344	17	2.1	18	90	5	58	45	0	0	54	1.00
376316--376361	12	3.8	12	86	11	58	50	0	0	50	1.00
378898--378943	3	15.7	3	86	4	67	36	0	2	60	1.09
381333--381372	19	2.1	19	86	9	55	57	2	5	35	1.34
392627--392703	17	4.6	17	76	14	79	79	1	11	7	1.00
392627--392698	23	3.0	23	80	13	83	79	1	12	6	0.99
392631--392698	8	8.4	8	76	20	61	79	1	11	7	0.99
392643--392713	17	4.1	17	73	22	67	77	0	12	9	0.99
393589--394899	332	4.0	332	93	1	2128	37	16	20	25	1.93
394488--394660	91	1.9	92	87	1	258	39	16	21	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395026--395077	3	17.7	3	92	4	88	36	0	0	63	0.95
397463--397502	19	2.1	19	86	9	55	57	2	5	35	1.34
398268--398404	17	7.9	18	72	14	83	38	10	10	40	1.74
398281--398388	34	3.2	33	77	4	99	40	12	9	37	1.76
398491--398517	7	3.9	7	100	0	54	29	14	11	44	1.80
399755--399904	75	2.0	73	89	6	232	51	10	7	31	1.63
401526--401575	23	2.2	23	92	0	82	38	8	22	32	1.83
401489--401651	87	1.9	87	94	0	290	40	12	15	31	1.85
401670--402170	201	2.5	196	78	6	492	31	15	14	38	1.88
403215--403241	12	2.2	12	100	0	54	29	0	14	55	1.40
403336--403390	20	2.8	20	94	0	101	16	20	18	45	1.86
403740--403786	20	2.3	20	96	0	85	21	17	8	53	1.70
403559--403968	202	2.0	202	91	1	662	28	14	11	44	1.81
403760--404720	182	5.3	182	93	0	1541	28	15	12	43	1.84
405430--405481	25	2.1	24	82	10	61	57	1	0	40	1.10
406727--406823	37	2.6	37	86	0	140	47	14	6	31	1.69
407189--407231	18	2.5	17	85	7	61	25	4	2	67	1.22
407177--407312	58	2.4	57	78	14	138	33	2	2	61	1.23
411343--411879	183	2.9	183	94	0	932	26	20	21	30	1.98
413191--413574	104	3.9	99	87	7	409	29	21	12	36	1.90
413280--413354	39	1.9	39	83	5	98	26	22	13	37	1.91
413474--413549	36	2.1	36	90	0	116	22	21	15	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413749--414169	105	4.0	106	87	3	559	33	25	18	22	1.96
414712--414816	37	2.8	37	83	0	129	41	14	13	30	1.84
415174--415216	18	2.5	17	85	7	61	25	4	2	67	1.22
418958--419014	26	2.4	23	83	13	71	21	10	3	64	1.39
418964--419021	26	2.2	26	100	0	116	24	10	3	62	1.43
422169--422219	20	2.6	20	81	9	61	35	13	27	23	1.93
422630--423011	55	6.9	54	82	9	441	30	17	16	35	1.92
422621--422964	169	2.1	165	84	8	462	29	16	16	36	1.92
428243--428286	20	2.1	21	87	4	63	43	11	9	36	1.72
428450--428500	20	2.5	20	93	6	86	45	9	1	43	1.48
429459--429527	34	2.0	34	97	0	129	43	15	14	26	1.85
430303--430367	27	2.6	24	80	17	78	33	1	1	63	1.13
430802--430828	5	5.4	5	100	0	54	59	0	0	40	0.98
430966--430990	13	1.9	13	100	0	50	56	0	4	40	1.18
431005--431050	17	2.8	16	84	15	67	50	0	6	43	1.28
431005--431058	17	3.2	17	78	21	60	50	1	5	42	1.36
432700--433423	200	3.6	197	86	3	945	29	16	15	38	1.89
435772--435819	19	2.5	19	93	0	78	52	8	4	35	1.51
437363--437925	199	2.8	198	86	5	778	32	15	12	39	1.84
441754--441781	2	14.0	2	100	0	56	50	0	0	50	1.00
442435--444001	200	7.8	199	91	1	2156	30	15	15	38	1.89
442435--443995	402	3.9	401	90	1	2218	30	15	15	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444426--444470	19	2.4	19	96	0	81	57	11	0	31	1.33
446016--446063	18	2.6	19	90	6	80	12	33	0	54	1.38
448611--448963	181	1.9	182	89	1	548	27	16	13	42	1.86
449615--449664	24	2.0	25	81	11	59	24	22	0	54	1.45
459466--459518	21	2.5	21	78	9	63	24	24	26	24	2.00
462019--462043	12	2.1	12	100	0	50	36	16	32	16	1.90
461808--462237	232	1.9	232	96	0	797	28	20	18	31	1.97
462501--462533	15	2.1	16	88	5	50	33	12	12	42	1.79
463051--463168	60	2.0	60	83	3	148	27	19	22	30	1.98
466905--466944	13	2.9	14	81	7	55	17	0	22	60	1.37
466990--467063	24	3.2	24	61	24	59	44	2	20	32	1.65
466968--467138	91	1.9	90	92	1	288	39	7	21	31	1.80
466968--467138	45	3.8	45	92	1	288	39	7	21	31	1.80
468692--468736	2	22.5	2	100	0	90	51	0	0	48	1.00
468743--468777	18	1.9	18	88	11	54	65	8	0	25	1.21
469228--469264	2	18.5	2	100	0	74	51	0	0	48	1.00
481915--481949	13	2.7	13	90	0	52	42	2	31	22	1.68
486920--487415	82	6.0	81	83	5	589	29	22	11	36	1.89
486965--487406	171	2.6	167	87	4	617	29	22	11	36	1.89
487366--487756	68	5.8	68	90	0	613	29	24	15	30	1.96
487968--488187	59	3.8	59	85	3	290	39	19	9	32	1.83
490286--490331	23	2.0	24	82	4	58	21	10	23	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511075--511115	20	2.0	20	85	0	55	29	9	21	39	1.86
513316--513362	17	2.8	16	81	9	58	40	0	2	57	1.11
514254--514280	3	9.0	3	100	0	54	66	0	0	33	0.92
520844--521318	89	5.5	88	87	7	692	28	25	23	22	1.99
520962--521298	81	4.1	81	88	6	523	29	25	23	22	1.99
524060--524129	30	2.3	30	85	4	88	32	21	24	21	1.98
546156--546284	59	2.2	59	84	0	159	28	24	18	27	1.98
550987--551020	16	2.1	16	94	0	59	58	0	2	38	1.13
552649--552674	2	13.0	2	100	0	52	50	0	0	50	1.00
563915--563948	16	2.1	16	94	0	59	61	0	0	38	0.96
568564--568595	14	2.3	14	100	0	64	31	6	15	46	1.71
576000--576147	48	3.1	48	88	0	206	47	19	8	23	1.77
576026--576103	24	3.2	24	65	20	63	48	19	8	23	1.76
577042--577099	19	3.0	19	78	12	64	56	22	0	20	1.42
582577--582692	53	2.2	53	88	0	178	36	18	18	26	1.94
582708--582851	48	3.1	46	85	5	175	47	18	8	25	1.76
603520--603647	39	3.2	39	84	4	114	25	25	18	30	1.98
603561--603648	39	2.3	39	89	0	131	26	27	19	27	1.99
614954--615038	25	3.4	25	96	0	152	17	41	0	41	1.50
617796--617860	18	3.4	18	70	12	58	47	15	7	29	1.73
617776--617858	39	2.1	39	93	0	139	49	15	7	27	1.71
617776--617840	21	3.2	21	65	12	55	50	15	7	26	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624339--624774	81	5.4	81	88	0	559	27	21	11	39	1.88
624746--624931	68	2.7	68	88	0	282	31	24	15	29	1.95
625125--625270	55	2.7	54	86	4	188	36	19	9	34	1.84
627254--627336	39	2.1	39	93	0	139	46	16	7	28	1.74
627382--627418	19	1.9	19	89	10	58	21	27	0	51	1.48
627482--627525	19	2.4	19	85	11	56	29	18	9	43	1.80
632550--632717	75	2.2	76	80	6	180	33	14	13	38	1.84
632675--632872	69	2.9	68	80	8	195	27	19	11	41	1.85
632676--632947	73	3.9	70	79	8	248	27	19	10	42	1.84
632746--632978	73	3.3	71	80	9	242	25	21	10	42	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11