genome.fa.s6093.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006093.1 Hibiscus syriacus cultivar Beakdansim tig00014444_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3172561

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  1  of  13  ( 1555 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8380--8425	22	2.1	22	100	0	92	47	13	8	30	1.72
23717--23765	20	2.5	20	100	0	98	24	18	18	38	1.93
34264--34438	90	2.0	89	90	1	278	45	6	10	36	1.66
41034--41211	90	2.0	90	92	0	293	44	6	11	37	1.68
57452--57499	20	2.4	20	80	19	64	20	25	22	31	1.98
66660--67214	45	12.3	45	85	0	716	24	19	13	42	1.87
79385--79438	26	2.1	26	86	6	74	25	1	11	61	1.40
83419--83794	112	3.3	112	89	1	556	34	11	11	42	1.77
84129--84462	112	3.0	111	91	0	533	33	11	11	44	1.76
84129--84462	111	3.0	112	90	0	535	33	11	11	44	1.76
83068--85158	694	3.0	693	92	2	3464	37	8	10	43	1.71
84811--85283	112	4.2	112	91	1	696	33	9	12	43	1.76
85540--85583	23	1.9	23	90	0	70	34	18	11	36	1.86
85524--85955	87	5.0	87	90	1	650	32	12	10	44	1.76
85704--85754	23	2.2	23	89	0	75	33	19	9	37	1.85
86786--86848	21	3.0	21	80	15	60	42	0	4	52	1.22
87371--87417	2	23.5	2	100	0	94	48	0	0	51	1.00
88092--88122	16	2.0	15	93	6	53	9	58	19	12	1.62
99727--99824	50	1.9	51	85	2	135	47	14	22	15	1.81
99812--99859	7	6.9	7	79	15	55	83	2	12	2	0.83
99811--99861	11	4.5	11	74	13	50	84	1	11	1	0.79
100671--101142	98	4.7	99	78	7	488	34	23	21	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100671--101142	203	2.4	198	88	3	678	34	23	21	20	1.97
101827--101857	16	2.0	15	93	6	53	9	58	19	12	1.62
107088--107565	54	8.8	54	87	3	633	32	17	19	31	1.95
107283--107421	27	5.1	27	61	16	72	28	17	19	34	1.95
112824--113353	54	9.8	54	89	3	671	32	17	18	31	1.94
115375--115418	18	2.7	15	83	16	52	50	0	25	25	1.50
118846--118902	13	4.4	13	76	12	55	24	10	21	43	1.83
120598--120628	2	15.5	2	100	0	62	48	0	0	51	1.00
119339--125804	980	6.6	985	85	4	8439	37	13	20	29	1.90
122745--122780	18	2.0	18	100	0	72	27	5	33	33	1.80
125800--128450	979	2.7	979	87	2	3791	36	14	19	29	1.91
127551--129351	905	2.0	899	88	1	2681	35	15	19	29	1.93
128452--150598	980	22.3	976	74	12	14970	36	13	20	29	1.91
134151--134575	218	1.9	219	91	1	692	39	6	22	31	1.79
134361--150598	980	16.5	978	80	8	16478	36	13	20	29	1.91
149740--151500	878	2.0	881	88	2	2639	36	13	20	29	1.91
150617--153190	980	2.6	976	88	2	3754	36	13	20	29	1.90
152926--153453	267	2.0	267	88	3	783	41	5	20	32	1.76
153193--157156	979	4.1	979	88	1	5637	36	13	20	29	1.91
156304--158024	866	2.0	868	89	2	2611	35	14	20	29	1.92
164892--164939	2	24.0	2	100	0	96	50	0	0	50	1.00
157170--168833	975	11.9	982	85	3	15132	36	13	19	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170593--170633	2	20.5	2	100	0	82	48	0	0	51	1.00
171749--171793	22	2.0	22	100	0	90	37	22	8	31	1.85
170615--172353	882	2.0	881	85	4	2367	35	15	19	28	1.93
173007--173742	370	2.0	370	89	1	1118	37	16	19	25	1.93
175949--184905	983	9.1	982	82	5	10327	36	13	19	29	1.91
178596--178626	2	15.5	2	100	0	62	48	0	0	51	1.00
184906--202974	984	18.4	982	91	1	27194	36	14	19	29	1.92
205552--205601	25	2.0	25	88	0	73	22	22	12	44	1.85
208995--209053	18	3.3	18	90	0	91	18	35	20	25	1.95
209573--209622	25	2.0	25	96	0	91	22	22	12	44	1.85
211571--211609	20	2.0	20	89	0	60	33	10	23	33	1.88
212921--212970	17	2.9	17	93	0	82	28	44	0	28	1.55
213233--213285	25	2.2	25	82	3	63	15	9	1	73	1.17
221247--221293	23	2.0	23	83	0	58	38	27	17	17	1.91
231834--231879	20	2.2	20	88	7	65	36	30	15	17	1.91
231911--231961	20	2.5	21	87	9	79	29	17	29	23	1.97
233356--233415	31	1.9	31	89	0	93	40	5	10	45	1.60
233636--233675	21	1.9	21	85	10	55	35	0	2	62	1.09
233883--233944	18	3.2	20	78	19	62	61	0	1	37	1.06
233967--234053	23	3.5	23	77	17	93	51	2	0	45	1.13
233940--234045	52	2.1	51	89	3	160	53	2	0	43	1.15
233967--234052	24	3.5	24	79	13	93	52	2	0	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235008--235132	44	2.9	44	96	1	225	27	15	20	36	1.93
235468--236017	254	2.1	254	87	7	779	41	18	12	27	1.87
239624--239648	12	2.1	12	100	0	50	44	8	0	48	1.32
242582--242615	11	3.1	11	84	16	52	55	14	2	26	1.53
244498--244522	3	8.3	3	100	0	50	68	0	32	0	0.90
245649--245703	23	2.5	21	82	5	65	29	3	3	63	1.28
246296--246337	20	2.1	20	90	0	66	28	11	11	47	1.76
249007--249058	26	2.0	26	100	0	104	46	15	0	38	1.46
254206--254261	28	2.0	28	82	0	67	32	33	3	30	1.75
255010--255044	3	11.7	3	93	0	61	62	0	2	34	1.10
258596--258621	2	13.0	2	100	0	52	50	0	0	50	1.00
261696--261736	21	1.9	22	90	5	66	75	4	0	19	0.98
261733--261774	20	2.0	20	86	4	57	59	2	0	38	1.10
262509--262574	29	2.2	31	79	17	77	40	16	3	39	1.64
267380--267880	253	2.0	253	97	0	957	37	17	24	20	1.94
274374--274420	24	2.0	24	86	0	67	46	12	10	29	1.76
278537--278568	16	2.0	16	100	0	64	31	31	6	31	1.82
281338--281386	24	2.0	24	88	0	71	42	14	10	32	1.79
281923--281990	31	2.3	30	80	10	77	36	20	5	36	1.77
285238--285283	21	2.3	19	88	7	65	36	8	21	32	1.84
285810--285962	81	1.9	81	87	0	225	37	12	21	28	1.90
285969--286552	46	12.7	46	89	2	852	42	12	21	22	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287949--288021	26	2.8	26	100	0	146	30	31	19	19	1.96
289414--289459	24	1.9	24	100	0	92	45	10	8	34	1.70
291980--292034	22	2.5	22	77	16	60	29	18	14	38	1.90
304456--304500	21	2.1	21	95	0	81	35	6	28	28	1.83
306119--306148	8	3.8	8	100	0	60	13	0	20	66	1.24
306120--306156	8	4.4	9	93	6	53	8	0	21	70	1.13
306175--306208	18	1.9	18	94	5	61	14	0	0	85	0.60
310919--310948	16	1.9	16	93	6	53	23	3	13	60	1.48
314114--314156	21	2.0	21	95	0	77	27	18	16	37	1.92
317814--317931	54	2.2	54	83	3	139	36	14	16	32	1.89
322381--322415	2	17.5	2	100	0	70	48	0	0	51	1.00
326440--326512	34	2.1	34	97	0	137	42	2	28	26	1.69
326521--326582	29	2.1	30	82	8	74	24	4	30	40	1.76
333422--333469	21	2.2	23	85	7	64	62	4	16	16	1.48
342076--342136	3	20.3	3	94	0	77	59	3	4	32	1.35
342330--342471	71	2.0	69	90	5	223	51	4	19	23	1.66
345192--345231	19	2.0	20	90	4	64	35	0	30	35	1.58
352575--352623	26	1.9	25	100	0	89	38	4	12	44	1.61
352794--352948	61	2.5	61	81	2	177	26	15	27	30	1.96
373309--373388	23	3.4	23	86	6	108	27	10	12	50	1.72
377919--377948	15	2.0	15	93	0	51	40	3	20	36	1.69
378446--378495	23	2.2	23	96	0	91	36	4	26	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386497--386724	112	2.0	112	84	3	298	38	17	13	31	1.88
390009--390034	6	4.3	6	100	0	52	34	0	0	65	0.93
396468--396512	23	2.0	21	83	8	54	35	2	11	51	1.50
397306--397367	31	2.0	31	93	0	106	29	3	32	35	1.73
399414--399455	21	2.0	22	90	4	68	42	4	9	42	1.58
401179--403786	6	446.2	6	92	7	4331	33	0	0	66	0.92
409969--410455	46	10.6	46	87	6	673	20	22	13	43	1.86
410100--410245	20	6.7	20	69	21	87	21	26	10	42	1.84
410447--410561	48	2.5	46	85	2	149	19	18	13	48	1.81
417369--417814	20	20.0	20	71	20	255	20	23	10	44	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13