genome.fa.s73.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000073.1 Hibiscus syriacus cultivar Beakdansim tig00000132_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1402814

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 807 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365749--365851	50	2.0	52	88	9	156	33	12	17	35	1.88
365837--365901	28	2.3	28	91	2	103	36	7	13	41	1.74
365850--366077	67	3.5	67	86	5	272	29	12	12	46	1.78
366366--366432	28	2.4	28	92	2	107	35	8	13	41	1.76
366483--366557	35	2.1	36	85	7	100	36	18	10	34	1.86
366944--367273	40	7.8	39	70	17	205	25	31	18	23	1.98
366983--367314	43	7.7	43	72	11	232	26	31	19	23	1.98
366892--367363	129	3.7	129	96	0	838	25	30	19	24	1.98
367298--367394	43	2.2	43	83	7	113	26	27	19	25	1.99
367563--367609	3	16.0	3	87	12	71	31	0	0	68	0.90
367691--367767	25	3.1	25	94	0	136	37	19	14	28	1.91
373678--373704	2	13.5	2	100	0	54	51	0	0	48	1.00
377345--377388	21	2.0	22	82	4	54	13	11	13	61	1.57
378400--378497	47	2.1	46	81	7	108	25	21	23	29	1.99
381606--381652	3	15.7	3	80	8	51	65	4	0	29	1.11
381897--382101	44	4.9	42	69	16	138	28	20	20	31	1.97
381856--382193	125	2.7	124	85	2	444	29	18	21	29	1.97
382523--382617	32	3.0	32	83	6	120	32	23	12	31	1.92
384159--384185	2	13.5	2	100	0	54	48	0	0	51	1.00
385911--385955	14	3.2	13	84	6	54	60	8	17	13	1.58
385913--385951	7	5.4	7	90	3	51	66	5	15	12	1.41
385901--385955	21	2.7	21	88	8	78	60	9	18	12	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387231--387448	103	2.1	103	94	0	382	25	13	23	37	1.91
387488--387532	23	2.0	23	86	0	63	24	17	24	33	1.96
392381--392597	102	2.1	103	96	0	400	25	13	23	36	1.92
392613--392681	23	3.0	23	80	0	75	23	21	24	30	1.99
393920--393981	32	1.9	32	86	0	88	58	8	14	19	1.61
394919--394957	18	2.2	19	86	9	55	61	2	5	30	1.31
396730--396762	3	10.7	3	93	6	57	66	0	0	33	0.92
396726--396762	19	1.9	19	94	0	65	64	0	0	35	0.94
397291--397358	21	3.1	21	70	6	64	8	17	16	57	1.64
397789--397820	5	6.8	5	86	13	50	37	0	0	62	0.95
398774--398832	29	2.0	30	87	9	86	30	1	15	52	1.52
401802--401832	16	1.9	16	93	0	53	19	35	3	41	1.67
409503--409539	13	2.9	13	84	15	51	54	0	13	32	1.40
410045--410102	23	2.5	23	94	0	98	17	27	25	29	1.97
412708--412751	15	2.9	15	82	3	52	63	0	2	34	1.07
415210--415234	12	2.1	12	100	0	50	20	16	24	40	1.91
420076--420144	22	3.3	21	86	6	86	42	1	1	55	1.18
420325--420422	49	2.0	49	100	0	196	26	12	12	48	1.75
429228--429300	20	3.6	20	85	3	110	38	21	13	26	1.91
429289--429336	20	2.5	20	93	3	80	43	25	12	18	1.85
429926--429977	20	2.6	19	84	3	68	13	13	21	51	1.74
431461--431510	21	2.4	21	80	6	57	22	14	32	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431918--432033	21	5.5	22	82	9	152	19	38	17	24	1.93
431918--432033	42	2.8	42	92	2	180	19	38	17	24	1.93
433594--433693	20	5.0	20	80	4	112	23	21	20	36	1.96
433589--433693	40	2.6	40	87	0	147	21	20	20	36	1.96
434006--434046	18	2.3	18	91	0	64	17	2	26	53	1.56
436330--436381	24	2.2	24	82	0	59	36	19	17	26	1.94
436493--436526	12	2.8	12	90	0	50	14	0	29	55	1.40
437290--437397	20	5.5	20	79	9	98	37	12	24	26	1.90
438560--438725	81	2.0	81	81	2	190	33	19	11	35	1.88
440638--440664	10	2.7	10	100	0	54	51	0	7	40	1.30
448619--448663	23	2.0	23	86	0	63	24	24	26	24	2.00
448631--448945	149	2.1	149	93	2	535	33	21	17	26	1.96
450453--450497	21	2.1	21	87	0	63	15	24	28	31	1.96
453657--453724	23	3.0	23	95	0	118	23	26	27	22	1.99
453700--454006	149	2.1	149	94	1	544	34	21	17	27	1.95
455514--455558	21	2.1	21	87	0	63	15	24	28	31	1.96
460865--460892	2	14.0	2	100	0	56	50	0	50	0	1.00
461949--462008	31	2.0	30	84	12	79	26	11	5	56	1.55
462016--462112	45	2.2	45	92	0	158	30	14	14	40	1.86
463035--463178	60	2.4	60	79	6	141	31	22	4	40	1.75
463303--463463	58	2.7	58	82	8	166	50	5	11	32	1.61
463370--463464	29	3.3	29	71	21	90	52	5	5	36	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463989--464025	15	2.5	15	90	0	56	8	16	67	8	1.40
466984--467456	194	2.4	193	82	3	556	39	11	12	36	1.78
468355--468410	25	2.2	25	78	15	62	60	5	0	33	1.19
473977--474020	20	2.2	20	95	0	79	20	15	27	36	1.93
478080--478129	7	7.4	7	77	8	59	28	32	26	14	1.94
478084--478129	13	3.5	13	78	3	56	28	32	26	13	1.93
486574--486603	15	2.0	15	100	0	60	33	20	26	20	1.97
490363--490462	23	4.3	23	88	5	130	29	21	17	33	1.95
490363--490462	46	2.2	46	88	0	146	29	21	17	33	1.95
490410--490453	12	3.8	12	81	6	63	20	20	22	36	1.95
490353--490462	11	9.6	11	73	7	76	29	20	17	32	1.96
495030--495058	12	2.4	12	100	0	58	0	41	31	27	1.56
495571--495631	21	2.9	21	97	0	113	6	24	42	26	1.79
495571--495675	21	4.9	22	82	9	94	11	24	38	25	1.89
496310--496355	25	1.9	24	86	8	67	36	4	4	54	1.40
496745--496806	20	2.9	21	80	9	63	17	24	35	22	1.95
498310--498474	82	2.0	82	96	0	303	23	26	14	35	1.93
503398--503789	186	2.1	186	93	0	678	45	8	3	42	1.51
510837--510880	22	2.0	22	86	8	63	45	20	0	34	1.51
514558--514626	18	3.9	18	82	3	86	44	14	8	31	1.75
519776--519814	19	2.1	19	100	0	78	30	23	30	15	1.95
520688--520731	18	2.4	18	85	7	63	25	22	9	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522159--525454	4	842.2	4	92	5	5668	24	0	25	49	1.51
527273--527320	23	2.1	23	84	0	60	37	12	16	33	1.86
527698--527743	21	2.2	21	92	0	74	43	21	2	32	1.65
528080--528166	39	2.2	39	95	0	156	17	13	20	48	1.81
528425--528461	18	2.1	18	89	0	56	51	10	5	32	1.60
528710--528760	25	2.0	25	92	0	84	39	19	7	33	1.81
528980--529016	18	2.1	18	89	0	56	48	10	16	24	1.77
529442--529489	22	2.2	22	85	7	62	41	20	2	35	1.64
529449--529510	23	2.8	22	80	4	72	35	20	6	37	1.79
528795--530033	423	2.9	426	92	5	2041	39	12	8	39	1.74
529865--529916	23	2.3	22	90	6	77	44	19	1	34	1.62
529875--529937	23	2.7	23	90	0	90	38	19	6	36	1.77
532638--533158	181	2.9	183	94	1	897	33	16	14	35	1.89
534586--534674	3	30.0	3	75	2	81	24	34	5	34	1.79
535978--536796	193	4.2	198	93	4	1449	32	16	15	35	1.91
536797--538190	197	7.1	198	94	3	2476	32	16	15	35	1.90
536797--538190	395	3.6	394	95	3	2504	32	16	15	35	1.90
536797--538190	587	2.4	587	94	3	2492	32	16	15	35	1.90
538341--538389	19	2.6	19	93	0	80	57	10	2	30	1.43
540140--540205	33	2.0	33	87	0	96	24	45	1	28	1.62
542438--542480	20	2.3	18	85	14	61	20	16	11	51	1.75
542443--542494	20	2.6	19	82	8	68	17	15	11	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542714--543116	219	1.8	222	93	4	710	39	7	8	45	1.62
545372--545409	19	2.0	19	100	0	76	31	10	31	26	1.90
549814--549887	30	2.5	31	77	12	84	66	2	1	29	1.14
559158--559271	59	1.9	59	87	3	167	35	30	5	28	1.79
571847--571873	14	1.9	14	100	0	54	44	0	11	44	1.39
573749--573786	18	2.1	19	85	5	51	23	5	5	65	1.34
580072--580101	14	2.2	13	94	5	51	90	0	10	0	0.47
581785--581822	18	2.1	19	90	5	60	23	7	5	63	1.42
582554--582618	31	2.1	31	88	5	96	35	29	15	20	1.93
586323--586356	15	2.3	15	100	0	68	32	8	20	38	1.84

Tables:   1   2   3   4   5   6   7