genome.fa.s73.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000073.1 Hibiscus syriacus cultivar Beakdansim tig00000132_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1402814

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 807 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1289476--1289522	20	2.3	20	92	0	76	23	12	36	27	1.91
1293716--1293747	15	2.1	15	94	0	55	43	3	25	28	1.69
1293723--1293754	15	2.1	15	94	0	55	46	0	21	31	1.52
1295411--1295444	7	4.7	7	96	3	59	0	41	0	58	0.98
1299764--1299788	5	5.0	5	100	0	50	80	0	20	0	0.72
1301082--1301110	5	5.8	5	100	0	58	0	58	0	41	0.98
1301302--1301439	21	6.7	21	72	6	77	37	25	16	20	1.93
1301406--1301599	20	9.6	20	80	5	212	35	25	19	19	1.95
1301406--1301599	60	3.2	60	81	3	237	35	25	19	19	1.95
1301982--1302052	33	2.2	33	89	0	106	11	21	18	49	1.78
1302131--1302208	41	1.9	41	97	0	147	44	16	25	12	1.83
1302132--1302207	21	3.7	21	83	3	109	46	17	25	11	1.82
1302192--1302248	14	3.7	14	75	20	60	42	22	24	10	1.85
1302187--1302251	33	2.0	33	100	0	130	43	21	24	10	1.84
1302190--1302264	33	2.3	33	92	0	123	45	24	21	9	1.81
1302260--1302376	19	6.9	19	68	24	84	11	23	21	43	1.84
1302282--1302371	14	5.7	14	72	23	72	10	24	23	42	1.84
1302265--1302379	33	3.5	33	95	0	212	10	23	20	45	1.82
1304078--1304878	93	8.6	93	99	0	1566	21	13	18	46	1.83
1306318--1306353	14	2.6	14	95	0	63	33	0	22	44	1.53
1306460--1306505	20	2.3	20	96	3	85	45	17	21	15	1.85
1306530--1306820	33	8.5	33	73	18	238	13	22	17	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1306552--1306820	19	15.4	19	76	18	291	13	21	17	46	1.82
1306530--1306792	52	5.0	52	98	0	508	13	23	16	46	1.83
1309104--1309128	12	2.1	12	100	0	50	0	28	0	72	0.86
1310032--1310261	20	11.5	20	84	1	228	20	18	24	36	1.94
1310248--1310330	21	4.0	21	73	6	78	25	16	24	33	1.96
1310228--1310326	42	2.4	43	77	11	100	21	18	23	37	1.94
1319798--1319822	8	3.1	8	100	0	50	48	0	28	24	1.52
1322281--1322334	20	2.7	20	83	11	74	35	22	16	25	1.95
1322278--1322395	61	1.9	62	83	8	152	38	22	16	22	1.92
1322301--1322391	41	2.2	41	88	0	137	38	21	16	23	1.93
1322321--1322395	21	3.7	20	71	10	62	38	22	17	21	1.93
1322563--1322606	22	2.0	22	95	0	79	20	45	15	18	1.85
1322869--1322927	20	3.0	20	87	0	73	16	18	22	42	1.89
1323064--1323118	25	2.2	24	78	15	58	20	9	18	52	1.71
1324246--1324290	18	2.5	18	88	0	72	26	44	15	13	1.83
1324772--1324817	20	2.3	20	84	0	56	36	23	21	17	1.94
1324783--1324838	20	2.8	20	81	2	69	39	21	23	16	1.92
1324811--1324874	19	3.7	18	76	20	73	43	20	21	14	1.87
1324886--1324975	14	5.8	14	71	21	63	11	16	21	51	1.75
1324888--1324992	33	3.2	33	89	1	167	12	17	20	49	1.78
1324977--1325032	20	2.8	19	86	7	76	16	25	23	35	1.94
1326899--1326937	14	2.8	14	84	0	51	35	0	17	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1327074--1327160	19	4.8	19	89	10	139	47	17	21	13	1.82
1327064--1327160	38	2.8	33	85	14	149	46	18	21	13	1.83
1327187--1327274	20	4.4	20	77	5	106	15	20	23	39	1.91
1327167--1327254	40	2.4	37	81	11	101	15	19	21	43	1.88
1327488--1327537	20	2.5	20	80	0	73	22	18	22	38	1.94
1327564--1327615	20	2.5	21	87	3	70	21	21	17	40	1.91
1328400--1328453	24	2.2	24	90	0	81	22	16	20	40	1.91
1328628--1328664	12	3.1	12	100	0	74	72	0	27	0	0.84
1330956--1331082	33	3.8	33	84	6	168	44	18	22	14	1.86
1330936--1331049	19	6.5	19	65	20	59	42	19	21	16	1.89
1330961--1331089	66	2.0	66	93	3	224	44	17	21	15	1.86
1331082--1331123	19	2.2	19	86	0	57	16	19	21	42	1.89
1331091--1331157	19	3.8	19	73	18	72	11	22	19	46	1.82
1331094--1331157	33	1.9	33	96	0	119	10	23	20	45	1.82
1331264--1331300	14	2.6	14	91	0	65	45	24	0	29	1.53
1332656--1332722	21	3.2	21	68	4	55	20	20	35	22	1.96
1332656--1332778	42	2.9	41	79	7	113	23	18	36	21	1.95
1332996--1333180	91	2.0	90	91	6	300	47	18	12	21	1.82
1334916--1334971	14	3.6	14	74	21	58	41	25	23	10	1.86
1334892--1334990	33	3.0	33	92	1	162	41	23	24	11	1.86
1334929--1335045	52	2.2	52	93	0	198	44	22	22	11	1.84
1334867--1335045	19	10.1	19	71	19	136	44	20	23	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1335621--1335672	20	2.5	20	78	3	59	21	23	17	38	1.93
1335669--1335724	20	2.7	21	80	5	69	42	16	21	19	1.89
1335668--1335734	21	3.2	21	78	4	73	38	16	22	22	1.92
1335826--1335866	21	2.0	21	85	0	55	34	29	17	19	1.94
1347816--1347931	9	12.6	9	70	8	63	13	3	5	77	1.07
1347821--1347889	31	2.3	31	76	14	72	13	2	5	78	1.05
1347808--1347852	21	2.0	23	91	8	76	15	0	6	77	0.96
1347839--1347949	26	4.2	26	75	11	75	13	6	3	76	1.11
1351506--1351540	18	1.9	18	94	0	61	37	28	17	17	1.92
1366328--1366421	29	3.2	29	65	21	77	38	6	22	32	1.79
1366329--1366477	29	5.0	29	63	20	74	38	6	22	32	1.79
1366329--1366495	60	2.8	60	82	8	207	37	5	22	33	1.79
1383133--1383193	23	2.7	23	89	0	95	26	27	26	19	1.99
1383216--1383416	103	2.0	103	96	0	375	36	22	12	28	1.91
1384486--1384523	20	1.9	20	84	10	51	34	10	5	50	1.59
1388222--1388274	23	2.3	23	90	0	88	26	26	26	20	1.99
1388292--1388499	103	2.1	97	92	6	353	36	24	13	25	1.92
1389556--1389594	20	2.0	19	85	5	51	35	10	5	48	1.59
1391259--1391311	21	2.6	21	77	14	56	41	5	0	52	1.25
1402628--1402678	21	2.4	22	83	9	70	49	0	5	45	1.26
1402644--1402676	10	3.2	10	91	8	57	51	0	3	45	1.16

Tables:   1   2   3   4   5   6   7

The End!