genome.fa.s73.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000073.1 Hibiscus syriacus cultivar Beakdansim tig00000132_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1402814

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 807 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591325--591364	14	2.9	14	85	11	55	22	0	30	47	1.52
591286--591365	21	3.9	21	70	8	65	25	0	25	50	1.50
591430--591506	14	5.5	14	72	14	52	24	0	27	48	1.52
591451--591507	21	2.7	21	81	8	71	24	0	28	47	1.52
607783--607827	7	6.4	7	83	16	58	55	0	0	44	0.99
609104--609134	3	10.7	3	93	6	55	64	0	0	35	0.94
609323--609394	35	2.0	36	97	2	137	16	19	19	44	1.87
616340--616384	22	2.0	22	100	0	90	24	31	13	31	1.93
618237--618269	15	2.2	15	94	0	57	36	33	15	15	1.88
618414--618448	12	2.9	12	91	0	52	37	25	5	31	1.80
618757--618977	64	3.5	63	84	4	248	27	19	20	33	1.96
624308--624333	3	8.7	3	100	0	52	65	0	0	34	0.93
624966--625005	17	2.4	17	91	0	62	40	0	0	60	0.97
625605--625660	25	2.3	26	82	17	68	32	1	1	64	1.14
625611--625669	25	2.3	25	75	16	59	30	1	3	64	1.20
630482--630951	51	8.9	51	90	4	553	28	27	16	28	1.97
630482--630938	106	4.3	106	89	3	589	27	27	16	28	1.97
630955--631059	38	2.8	38	95	0	192	20	20	18	40	1.91
632341--632480	16	8.9	16	67	21	66	7	19	0	72	1.11
632341--632482	41	3.4	39	74	21	119	7	19	0	73	1.10
642090--642197	45	2.3	47	88	7	157	42	19	7	30	1.78
648457--648491	15	2.3	15	86	13	54	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648454--648509	24	2.5	22	75	13	60	30	0	1	67	1.01
652874--652932	31	1.9	31	96	0	109	28	15	11	44	1.82
654308--654379	32	2.3	31	83	7	83	34	33	16	15	1.90
654523--654581	12	4.9	12	82	0	73	50	20	18	10	1.75
654523--654581	24	2.5	24	85	0	91	50	20	18	10	1.75
655985--656044	14	4.4	14	79	8	79	40	18	5	36	1.72
655999--656050	26	2.0	26	100	0	104	42	23	3	30	1.72
658456--658509	17	3.2	17	72	0	54	31	0	3	64	1.11
664604--664650	20	2.3	20	100	0	94	40	17	29	12	1.86
666483--666524	22	1.9	22	95	0	75	45	11	16	26	1.82
667759--667789	15	2.1	15	93	0	53	45	0	0	54	0.99
668601--668678	32	2.4	33	95	4	142	25	48	15	10	1.76
668756--668799	23	1.9	23	100	0	88	22	22	27	27	1.99
669225--669286	28	2.1	30	91	5	101	30	1	12	54	1.48
669784--669828	21	2.2	21	84	4	56	35	0	8	55	1.31
670211--670241	5	6.2	5	100	0	62	38	0	0	61	0.96
673082--673252	11	14.1	12	69	20	58	42	0	12	45	1.42
673075--673210	38	3.6	38	76	16	158	43	0	11	45	1.39
673134--673171	14	2.7	14	100	0	76	34	0	13	52	1.40
673072--673247	74	2.4	73	88	5	277	42	0	13	44	1.43
673089--673740	60	11.3	60	72	21	497	40	1	11	45	1.51
673107--673226	39	3.2	39	71	21	137	41	0	11	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673148--673740	108	5.3	108	73	15	469	40	1	11	45	1.51
673163--673309	21	7.3	21	64	20	71	42	0	12	44	1.41
673291--673398	48	2.2	49	90	1	164	41	0	11	46	1.46
673376--673438	14	4.7	14	86	11	78	34	3	15	46	1.62
673391--673439	25	2.0	25	91	0	80	36	2	16	44	1.59
673506--673591	21	4.2	20	65	18	52	41	0	12	45	1.42
673499--673595	11	8.1	12	69	20	53	43	0	12	44	1.42
673639--673756	21	5.1	22	74	19	89	40	0	10	49	1.37
673574--673729	48	3.2	48	96	0	267	41	0	10	48	1.37
673659--673755	14	6.7	14	71	19	65	39	0	12	48	1.41
673709--673756	25	1.9	25	95	0	87	39	0	16	43	1.48
675966--675996	15	2.1	14	94	5	53	54	6	0	38	1.26
675971--676017	16	3.0	16	84	9	53	59	10	0	29	1.31
676318--676358	22	1.9	22	90	5	66	53	21	0	24	1.46
676502--676585	26	3.3	26	91	1	125	8	35	8	47	1.64
677193--677294	32	3.3	31	88	9	138	10	16	46	26	1.80
677321--677404	42	2.0	42	95	0	150	20	29	36	13	1.90
679818--679854	18	2.1	18	100	0	74	54	10	10	24	1.67
681079--681130	21	2.5	21	81	3	61	38	19	25	17	1.93
681119--681172	20	2.7	20	97	0	99	31	24	18	25	1.97
681139--681233	41	2.3	41	83	0	127	38	23	14	23	1.91
681401--681444	22	2.0	22	95	0	79	20	45	15	18	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681708--681765	20	2.9	20	89	0	80	17	15	22	44	1.86
681902--681956	25	2.2	24	78	15	58	20	9	18	52	1.71
683085--683129	18	2.5	18	92	0	81	24	44	17	13	1.85
683622--683666	20	2.3	20	84	3	65	37	20	24	17	1.93
683650--683746	19	5.6	19	68	22	79	48	20	18	12	1.80
683666--683723	14	3.8	14	73	20	53	51	22	15	10	1.73
683650--683741	33	2.8	33	94	0	157	50	20	17	11	1.78
683758--683848	14	5.9	14	72	20	74	12	17	21	48	1.80
683753--683864	33	3.4	33	95	1	199	12	18	21	47	1.81
683849--683904	20	2.8	19	86	7	76	16	25	23	35	1.94
685753--685788	14	2.6	14	90	0	54	30	0	22	47	1.52
685915--685987	19	4.4	16	78	21	64	49	19	19	12	1.79
685925--685973	19	2.6	19	96	0	89	51	16	18	14	1.77
685925--685980	19	2.9	18	84	5	67	51	16	19	12	1.75
686019--686107	20	4.4	20	76	8	99	15	21	24	38	1.92
686310--686401	20	4.6	20	73	2	76	20	18	21	39	1.93
687223--687276	24	2.2	24	90	0	81	22	16	20	40	1.91
687451--687475	12	2.1	12	100	0	50	72	0	28	0	0.86
689767--689893	33	3.8	33	83	8	177	44	18	21	15	1.87
689768--689900	66	2.0	66	92	0	221	42	18	21	17	1.89
690056--690092	14	2.6	14	91	0	65	45	24	0	29	1.53
691449--691515	21	3.2	21	68	4	55	19	20	35	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691449--691567	42	2.8	41	80	7	105	22	18	36	22	1.95
691808--691960	78	1.9	79	88	7	229	45	16	12	25	1.83
693672--693768	33	2.9	33	90	4	142	45	19	23	11	1.83
693769--693816	20	2.5	19	77	12	53	10	16	27	45	1.80
694335--694387	20	2.7	20	88	5	72	26	18	28	26	1.98
694396--694449	20	2.7	20	97	0	99	25	18	24	31	1.97
694336--694470	61	2.2	61	80	2	146	22	19	24	33	1.97
694520--694560	21	2.0	21	85	0	55	34	29	17	19	1.94
706852--707752	182	5.0	182	88	4	1320	39	13	17	28	1.88
706852--707752	363	2.5	361	89	4	1330	39	13	17	28	1.88
709741--709795	24	2.5	22	81	18	62	49	0	3	47	1.19
710171--710214	21	2.1	21	86	0	61	40	11	34	13	1.81
710248--710314	33	2.0	33	97	0	125	26	0	49	23	1.51
710497--710535	18	2.2	18	100	0	78	56	0	43	0	0.99
712088--712136	19	2.6	19	96	0	89	32	2	10	55	1.45
712487--713632	199	5.8	199	86	4	1496	38	14	15	31	1.88
714065--714664	298	2.0	298	98	0	1164	34	15	18	31	1.92
715367--715418	6	8.7	6	89	0	77	44	3	32	19	1.69
715367--715434	9	7.6	9	72	0	55	41	2	29	26	1.70
715367--715418	18	2.9	18	97	0	95	44	3	32	19	1.69
716739--716787	24	2.0	24	88	0	71	36	6	12	44	1.67
717156--718326	200	5.8	200	87	1	1551	39	12	15	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722427--723134	205	3.5	197	82	7	779	40	14	14	30	1.86
723234--723275	21	2.0	21	90	0	66	38	16	7	38	1.76
723152--723312	85	1.9	86	85	2	225	36	11	8	44	1.71
723321--723355	16	2.2	16	100	0	70	40	17	5	37	1.73
744941--745008	35	1.9	35	82	11	86	48	19	11	20	1.80
745525--745549	2	12.5	2	100	0	50	48	0	0	52	1.00
748299--748329	16	1.9	16	100	0	62	58	3	0	38	1.15
752065--752450	174	2.2	174	92	0	630	41	13	12	32	1.82
752757--753171	230	1.8	230	91	1	697	35	6	22	35	1.81
754035--754059	10	2.5	10	100	0	50	44	48	8	0	1.32

Tables:   1   2   3   4   5   6   7