genome.fa.s7729.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007729.1 Hibiscus syriacus cultivar Beakdansim tig00109980_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1111098

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 752 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283284--283346	6	10.5	6	92	0	108	34	49	14	1	1.53
284043--284248	21	9.9	21	79	15	137	26	23	21	28	1.99
284127--284248	62	2.0	62	91	4	201	24	22	22	29	1.99
284100--284262	83	2.0	83	96	0	299	23	22	22	30	1.99
284126--284262	21	6.6	21	85	8	181	23	22	24	29	1.99
284461--284520	20	2.9	21	75	12	70	51	1	1	45	1.21
286514--286561	20	2.4	20	96	0	87	22	18	8	50	1.74
286524--286567	20	2.2	20	87	0	61	25	22	6	45	1.77
286632--286673	18	2.4	18	96	4	77	40	4	4	50	1.45
287382--287407	3	8.7	3	100	0	52	0	0	30	69	0.89
290149--290584	230	1.9	227	86	6	614	30	12	17	39	1.87
290763--290805	16	2.7	16	89	7	52	39	0	0	60	0.97
290769--290805	8	4.5	8	96	3	65	35	0	0	64	0.94
290913--290995	43	1.9	43	92	0	139	38	19	14	27	1.90
296956--296993	17	2.3	17	86	4	51	39	2	2	55	1.28
299827--299962	60	2.3	58	85	7	170	38	5	23	32	1.79
302334--302379	3	15.0	3	95	4	83	65	2	0	32	1.05
305988--306040	20	2.5	20	81	6	61	26	20	26	26	1.99
306389--306439	21	2.4	21	90	0	75	39	7	21	31	1.82
309281--309315	12	2.9	12	86	0	52	17	20	22	40	1.92
309527--309575	21	2.3	21	85	0	62	24	14	28	32	1.94
309569--309636	21	3.1	22	74	21	79	25	16	25	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309813--309947	65	2.1	65	97	1	254	22	15	17	44	1.86
315816--315888	20	3.5	21	79	7	78	28	15	24	31	1.95
315808--315888	42	2.0	41	85	4	110	28	13	25	32	1.94
315912--315976	22	3.2	20	74	16	62	27	15	30	26	1.96
316332--316382	21	2.4	21	86	0	66	39	9	19	31	1.84
316516--316593	21	3.7	21	81	3	95	24	17	26	30	1.97
316579--316646	22	3.1	22	75	14	68	25	14	25	35	1.94
321364--321394	16	1.9	16	93	0	53	41	0	6	51	1.27
323735--323777	21	2.0	21	81	0	50	27	27	25	18	1.98
328654--328750	32	3.1	32	77	14	119	29	17	17	35	1.93
328653--328753	31	3.2	31	79	10	116	29	18	17	33	1.95
328741--328834	30	3.1	30	87	3	127	21	21	26	30	1.98
331408--331467	29	2.1	29	96	0	111	41	6	5	46	1.52
332139--332186	21	2.3	21	85	7	62	33	10	22	33	1.88
337562--337719	60	2.6	60	83	5	167	32	22	5	39	1.77
337839--338015	58	3.0	60	80	3	196	42	4	20	32	1.72
340547--340699	76	2.0	76	100	0	306	45	6	10	37	1.64
340785--340826	2	21.0	2	100	0	84	50	0	0	50	1.00
348995--349019	2	12.5	2	100	0	50	52	0	0	48	1.00
353628--353740	35	3.2	34	76	9	120	34	18	18	28	1.95
353600--353740	71	2.0	71	91	2	230	33	19	19	28	1.96
355223--355257	18	1.9	18	100	0	70	22	8	34	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355227--355269	18	2.4	18	88	0	59	27	9	30	32	1.88
355266--355543	136	2.0	137	86	3	382	29	11	16	42	1.84
365293--365374	19	4.3	19	76	0	74	52	13	10	23	1.72
367989--368056	23	2.9	23	78	10	84	35	27	20	16	1.94
367996--368056	23	2.6	24	84	5	88	37	26	21	14	1.92
374498--374546	24	2.0	25	84	11	66	65	6	2	26	1.27
375028--375094	21	2.9	23	73	13	66	29	22	25	22	1.99
378681--378710	16	1.9	15	93	6	51	20	3	13	63	1.43
381523--381561	21	1.9	21	94	5	71	33	23	10	33	1.88
381434--381585	61	2.5	60	74	3	153	32	25	10	30	1.90
381613--381711	20	4.9	21	78	12	100	28	23	14	34	1.93
381639--381788	79	1.9	79	82	8	189	29	23	12	35	1.91
381741--381781	20	2.2	18	86	8	55	31	26	9	31	1.89
381613--381829	40	5.5	39	78	9	190	28	22	12	35	1.91
381978--382015	16	2.5	15	84	12	51	28	5	0	65	1.14
382752--382805	24	2.2	24	93	0	90	20	18	20	40	1.91
385077--385114	20	2.0	20	84	5	51	44	10	15	28	1.80
385200--385253	20	2.6	21	79	8	65	20	11	33	35	1.88
393318--393367	23	2.1	24	85	10	68	78	8	6	8	1.11
393722--393874	74	2.0	77	86	6	215	42	1	5	50	1.35
393816--393897	44	1.9	42	85	9	112	43	2	3	50	1.33
393730--393881	76	2.1	72	84	9	191	40	1	5	51	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394277--394317	21	1.9	22	85	5	57	53	0	0	46	1.00
394788--395053	94	2.8	94	83	7	344	45	8	9	36	1.67
395323--395414	24	3.9	24	82	1	114	14	23	15	46	1.82
395887--395921	2	17.5	2	100	0	70	51	0	0	48	1.00
397129--397195	20	3.3	20	77	4	80	43	17	20	17	1.88
397146--397221	21	3.7	21	75	3	82	42	17	23	17	1.89
397129--397221	41	2.3	41	94	0	159	41	17	22	18	1.90
397213--397304	20	4.6	20	76	2	76	35	23	17	22	1.95
397493--397536	22	2.0	22	95	0	79	20	45	15	18	1.85
397800--397837	20	1.9	20	88	0	58	13	15	21	50	1.78
399157--399201	18	2.5	18	88	0	72	26	44	15	13	1.83
399683--399738	20	2.8	20	83	2	69	37	23	23	16	1.93
399738--399795	14	3.9	14	77	16	62	48	22	17	12	1.80
399722--399812	32	2.8	33	93	3	157	47	20	18	13	1.82
399829--399886	14	3.9	14	79	16	71	10	17	24	48	1.78
399824--399902	32	2.4	33	91	2	133	11	18	22	46	1.81
399875--399941	19	3.5	19	83	4	89	14	23	23	37	1.93
399887--399941	20	2.8	19	89	5	83	16	25	23	34	1.95
401811--401846	14	2.6	14	90	0	54	30	0	22	47	1.52
401953--402002	14	3.2	14	75	24	55	48	20	20	12	1.80
401934--402011	33	2.4	33	88	0	111	43	21	21	12	1.86
401963--401999	19	1.9	19	88	0	56	51	16	21	10	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402030--402087	20	2.9	20	94	0	98	17	22	22	37	1.93
403152--403197	24	1.9	24	86	0	65	26	15	21	36	1.93
403372--403396	12	2.1	12	100	0	50	72	0	28	0	0.86
405686--405783	19	5.7	19	69	22	90	43	19	24	12	1.85
405686--405779	33	2.8	33	98	0	179	43	19	24	12	1.85
405779--405821	20	2.2	20	87	4	61	16	18	23	41	1.89
405962--405998	14	2.6	14	91	0	65	45	24	0	29	1.53
408721--408781	20	3.1	19	79	9	68	44	18	24	13	1.85
408746--408865	33	3.6	33	84	2	152	41	25	22	10	1.86
408834--408863	13	2.3	13	100	0	60	43	26	20	10	1.83
408749--408879	33	4.0	33	82	5	131	41	24	21	12	1.87
409454--409506	20	2.7	20	90	0	79	26	18	28	26	1.98
409515--409568	20	2.7	20	97	0	99	25	18	24	31	1.97
409455--409571	61	1.9	61	85	0	162	23	17	24	34	1.96
409455--409589	61	2.2	61	81	2	155	22	19	24	33	1.97
409914--409948	2	17.5	2	100	0	70	51	0	0	48	1.00
410139--410196	21	2.6	21	83	10	62	60	1	1	36	1.17
410807--410846	20	2.0	21	85	14	57	42	5	7	45	1.54
411014--411225	65	3.3	64	83	7	234	30	26	16	26	1.97
413170--413210	21	2.0	21	90	4	66	51	2	4	41	1.36
418391--418430	20	2.0	21	85	14	57	42	5	7	45	1.54
418598--418809	65	3.3	64	83	7	234	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420166--420200	2	18.0	2	94	5	63	48	0	0	51	1.00
422224--422289	6	10.8	6	82	12	73	1	13	1	83	0.79
422224--422290	7	9.7	7	87	9	86	1	13	1	83	0.79
428919--428972	23	2.3	23	84	6	65	77	9	5	7	1.11
428938--428992	23	2.5	22	82	11	67	74	10	9	5	1.21
429195--429249	27	2.0	28	82	10	69	74	1	1	21	1.01
429209--429267	22	2.8	20	80	16	59	71	3	0	25	1.02
429208--429287	24	3.3	24	77	11	74	67	2	1	28	1.11
450457--450500	3	14.7	3	100	0	88	65	0	34	0	0.93
456216--456256	20	2.1	20	86	4	57	34	0	9	56	1.32

Tables:   1   2   3   4   5   6   7