genome.fa.s7729.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007729.1 Hibiscus syriacus cultivar Beakdansim tig00109980_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1111098

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 752 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1081199--1081265	35	1.9	35	93	3	118	19	34	26	19	1.96
1082105--1082200	38	2.5	38	84	3	122	26	20	27	26	1.99
1086142--1086175	18	1.9	17	88	5	50	41	0	11	47	1.40
1097735--1098103	20	18.5	20	84	5	451	34	26	18	20	1.96
1098783--1098828	24	2.0	23	87	12	67	26	15	21	36	1.93
1099002--1099026	12	2.1	12	100	0	50	72	0	28	0	0.86
1101274--1101564	19	16.4	19	82	14	374	46	18	20	14	1.83
1101302--1101586	51	5.4	55	90	7	361	46	17	21	15	1.84
1101274--1101586	70	4.5	73	82	14	330	46	18	20	14	1.84
1101274--1101586	127	2.6	127	88	7	458	46	18	20	14	1.84
1101593--1101694	19	5.6	19	85	12	151	14	23	17	44	1.86
1101801--1101837	14	2.6	14	91	0	65	45	21	0	32	1.52
1103780--1103836	14	3.7	14	77	20	60	45	22	21	10	1.82
1103725--1103858	19	7.6	19	76	16	119	45	23	19	11	1.82
1103743--1103836	51	1.9	47	85	8	125	45	24	20	9	1.80
1103762--1103853	33	2.8	33	93	1	159	46	21	20	10	1.81
1103854--1103982	19	7.3	19	75	17	125	8	17	28	45	1.77
1103854--1103945	33	2.8	33	93	3	150	7	18	28	45	1.76
1104026--1104493	92	5.1	93	96	2	876	45	18	12	22	1.83
1106185--1106274	14	5.7	14	74	23	81	42	23	25	8	1.83
1106177--1106291	33	3.5	33	95	0	212	45	20	24	9	1.81
1106184--1106296	19	6.8	18	72	23	88	43	22	24	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1106308--1106362	14	3.6	14	73	21	56	9	25	23	41	1.83
1106292--1106362	33	2.2	33	94	0	124	8	22	25	43	1.81
1106303--1106384	33	2.5	33	89	2	119	9	25	21	42	1.84
1106315--1106403	20	4.8	20	72	19	75	12	24	19	43	1.85
1106482--1106552	33	2.2	33	92	0	115	47	18	22	11	1.80
1106731--1106783	22	2.4	22	80	0	70	20	15	39	24	1.91
1106929--1107121	20	9.6	20	82	5	219	19	19	25	35	1.95
1106929--1107121	60	3.2	60	83	0	251	19	19	25	35	1.95
1107177--1107227	19	2.6	20	93	3	86	21	13	27	37	1.91
1110956--1111098	61	2.3	62	94	5	256	38	13	25	21	1.91

Tables:   1   2   3   4   5   6   7

The End!